Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M19
(1328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.005
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.022
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.47
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 0.52
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 2.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.067
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 1045 PXXPXXPXXGGPPPPPXXPXXXRPXXPP 1128
P P P GGPPPPP P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 32.7 bits (71), Expect(2) = 0.005
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +3
Query: 1089 PXXXPXXPPXXPPPXXXXXXPPXPPXXXXGGXGGXXXPXPPXXXPXXPSXXXXXXXPAPP 1268
P P P PP PP PP G G P PP S A P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Query: 1269 PP 1274
P
Sbjct: 802 EP 803
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +2
Query: 1136 LXXPXPXPPXXKXXGGGRXXXPXPPPXPPXXXLXXXXXPXXRPPPPXXPPXXXPPXXPP 1312
L P P PP P PPP P P PPPP PP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAP------IMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 2.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 394 GGXPPPPPPP 365
GG PPPPPPP
Sbjct: 759 GGPPPPPPPP 768
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +3
Query: 1083 PXPXXXPXXPPXXPPPXXXXXXPPXPPXXXXGGXGGXXXPXPPXXXPXXPSXXXXXXXPA 1262
P P P P P PP PP G P PP P + PA
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPG-----VAGAGPPPPPPPPPAVSAGGSRYYAPA 796
Query: 1263 P 1265
P
Sbjct: 797 P 797
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = +1
Query: 1033 GGXXPXXPXXPXXG-GPPPPPXXP 1101
GG P P G GPPPPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 23.4 bits (48), Expect(2) = 0.005
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 921 PPPPPKXXXPPPXXXP 968
PPPPP P P P
Sbjct: 733 PPPPPAVIVPTPAPAP 748
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.022
Identities = 34/160 (21%), Positives = 37/160 (23%)
Frame = +3
Query: 834 PXXNPPPPXXXGGXFXTRGGGFXXXKXXSPPPPPKXXXPPPXXXPXXXXGGXGXXFXSPX 1013
P PPP G G +PPPPP P P +P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG-----RSAPPPPPPRSAPSTGRQPPPLSSSRAVS--NPP 389
Query: 1014 XQKKXXXGXPAXXXXXXXXXGAXPXPXXXPXXPPXXPPPXXXXXXPPXPPXXXXGGXGGX 1193
G A P PP PP P PP G
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPT--PPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 1194 XXPXPPXXXPXXPSXXXXXXXPAPPPPXXXPXXXPPPXXP 1313
P P P+ P P P P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 33.9 bits (74), Expect = 0.051
Identities = 26/115 (22%), Positives = 27/115 (23%), Gaps = 1/115 (0%)
Frame = +1
Query: 967 PXXXGGGXGXLXXPPXNKKXFXGGXXPXXPXXPXXGGPPPPPXXPXXXRPXXP-PXXXXX 1143
P G L PP + G P P PPPP P R P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAV 385
Query: 1144 XXPXXPXXXXXGGXXXXXXXXXXXXXPXXPXXXXXXXXPPPPPXXXXPXXPPXXP 1308
P P G P PP P P PP P
Sbjct: 386 SNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 33.1 bits (72), Expect = 0.089
Identities = 34/161 (21%), Positives = 35/161 (21%)
Frame = +3
Query: 846 PPPPXXXGGXFXTRGGGFXXXKXXSPPPPPKXXXPPPXXXPXXXXGGXGXXFXSPXXQKK 1025
PPPP G G PPPPP+ P G P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQ---GRSAPPPPPPRSAP 370
Query: 1026 XXXGXPAXXXXXXXXXGAXPXPXXXPXXPPXXPPPXXXXXXPPXPPXXXXGGXGGXXXPX 1205
P P P PP PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPT---PPSLPPSA 427
Query: 1206 PPXXXPXXPSXXXXXXXPAPPPPXXXPXXXPPPXXPXXXPP 1328
PP P P APP P P P P PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Frame = +3
Query: 1110 PPXXPPPXXXXXXPPXPPXXXXGGXGGXXXPXPP---XXXPXXPSXXXXXXXPAPPPPXX 1280
PP PPP P P P PP P P PPPP
Sbjct: 311 PPPPPPPSRRNRGKP--PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 1281 XP--XXXPPP 1304
P PPP
Sbjct: 369 APSTGRQPPP 378
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 1250 PXXRPPPPXXPPXXXPPXXPPXXXXP 1327
P PPPP PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 1072 GGPPPPPXXPXXXRPXXPP 1128
G PPPPP P P PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPP 25
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.47
Identities = 20/88 (22%), Positives = 20/88 (22%)
Frame = +2
Query: 1064 PXXGGXPXPXXXPXXXAXXXPPXXLXXPXPXPPXXKXXGGGRXXXPXPPPXPPXXXLXXX 1243
P P P A P P P P P PP P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074
Query: 1244 XXPXXRPPPPXXPPXXXPPXXPPXXXXP 1327
P PP P PP P P
Sbjct: 1075 SIPAPSGAPPVPAPSGIPPVPKPSVAAP 1102
Score = 30.7 bits (66), Expect = 0.47
Identities = 28/136 (20%), Positives = 29/136 (21%)
Frame = +3
Query: 921 PPPPPKXXXPPPXXXPXXXXGGXGXXFXSPXXQKKXXXGXPAXXXXXXXXXGAXPXPXXX 1100
PP P PP P +P K P GA P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS-----GAPPVPKPS 1146
Query: 1101 PXXPPXXPPPXXXXXXPPXPPXXXXGGXGGXXXPXPPXXXPXXPSXXXXXXXPAPPPPXX 1280
PP P P P P P P P P
Sbjct: 1147 VAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
Query: 1281 XPXXXPPPXXPXXXPP 1328
P PP P P
Sbjct: 1207 VPPVPPPSTAPPVPTP 1222
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = +3
Query: 1113 PXXPPPXXXXXXPPXPPXXXXGGXGGXXXPXPPXXXPXXPS 1235
P PPP PP P G P P P P+
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745
Score = 27.1 bits (57), Expect(2) = 0.52
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 918 SPPPPPKXXXPPPXXXP 968
+PPPPP PPP P
Sbjct: 1706 TPPPPPMSVPPPPSAPP 1722
Score = 21.8 bits (44), Expect(2) = 0.52
Identities = 9/27 (33%), Positives = 9/27 (33%)
Frame = +3
Query: 1083 PXPXXXPXXPPXXPPPXXXXXXPPXPP 1163
P P PP PPP P P
Sbjct: 1718 PSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 2.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 394 GGXPPPPPPP 365
GG PPPPPPP
Sbjct: 303 GGLPPPPPPP 312
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 4.4
Identities = 27/132 (20%), Positives = 28/132 (21%), Gaps = 5/132 (3%)
Frame = +3
Query: 924 PPPPKXXXPPPXXXPXXXXGGXGXXFXSPXXQKKXXXGXPAXXXXXXXXXGAXPXPXXXP 1103
PPPP P P G P + P P P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 267
Query: 1104 XXPPXXPPPXXXXXXPPXPPXXXXGGXGGXXXP-----XPPXXXPXXPSXXXXXXXPAPP 1268
PPP PP G P P P P PP
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Query: 1269 PPXXXPXXXPPP 1304
P P PP
Sbjct: 328 PMHHEPGEHMPP 339
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 1326 GXXXXGGXXGGXXXGGXXGGGGRXXGXXXXXRXXXGGXGGGXG 1198
G GG GG GG GG G R GG GG G
Sbjct: 24 GRGGFGGGRGGAR-GGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 27.1 bits (57), Expect = 5.8
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = -3
Query: 1311 GGXXGGXXXGGXXGGGGRXXGXXXXXRXXXGGXGGGXGXXXRPPPXXXXXGGXGXGXXXX 1132
GG GG GG GG G G R GG GG G GG G
Sbjct: 12 GGSRGGR--GGFNGGRGGFGGGRGGARG--GGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Query: 1131 XGG 1123
GG
Sbjct: 68 KGG 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.158 0.563
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,826
Number of Sequences: 5004
Number of extensions: 38426
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -