Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M19
         (1328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.64 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 1327 GGXXXGXXGGGXXXGXXXGGGGAG 1256
            GG   G  GG    G   GGGG G
Sbjct: 28   GGVVTGASGGSIVVGANNGGGGGG 51


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 385  PPPPPPP 365
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 385  PPPPPPP 365
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 1074 GAXPXPXXXPXXPPXXPPPXXXXXXPPXPP 1163
            G  P P   P  P    PP      PP  P
Sbjct: 22   GPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 1205 PPPXPPXXXLXXXXXPXXRPPPPXXPPXXXPPXXPP 1312
            P P P              P P   PP   PP  PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 394  GGXPPPPPPP 365
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.158    0.563 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,349
Number of Sequences: 438
Number of extensions: 10478
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45864066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)