Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M18
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    28   2.0  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   6.1  

>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 89  PLVSQRPPLNLHKLTMNFAKILSFVFALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGI 268
           PL+   PP N+   + +     +  FAL +  R+ ++ P+P+        ++ R I D +
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQIMDVV 204

Query: 269 VKAGPAIEV 295
            + G   EV
Sbjct: 205 TEMGKYTEV 213


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 20  LTIGNSLRFLDILDSAHQVISTAPLVSQRPPLNLHKLTMNFAKIL 154
           +   N+ R LD+L  + Q           PP NL  L + + ++L
Sbjct: 504 IRFNNNERVLDVLVESEQYSEALRFFESLPPSNLLPLLLKYGRVL 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,030
Number of Sequences: 5004
Number of extensions: 44913
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)