Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M18
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480...    32   0.69 
11_04_0009 - 12132781-12133272                                         28   8.5  
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   8.5  

>06_03_0783 -
           24546403-24546765,24547202-24547262,24547899-24548004,
           24548118-24551600,24553134-24553179
          Length = 1352

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 257 GCSCPFFQFS*RSS-TWAREQRWSFSKPAPERRRRIGSLRNSL*VYVNSKADVETQAALY 81
           GC+ PF      S  +W   +R +FS   P   + + S+   +   +N  A      A +
Sbjct: 380 GCTTPFSLSGLESEDSWELFRRCAFSTRDPNEHQEMKSIGECIVQKLNGSALAIKAVAGH 439

Query: 80  *SLDVHYQECPKILRNSL 27
            SL+ +Y E  ++L+N L
Sbjct: 440 LSLNFNYDEWNRVLKNGL 457


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 224 RSSTWAREQRWSFSKPAPERRRRIGSLR 141
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 26  IGNSLRFLDILDSAHQVISTAPLVSQRPPLNLHK 127
           +G+SL FLDI ++   ++S AP++ +   L   K
Sbjct: 392 VGSSLEFLDISETVVSMVSLAPVIRRNSNLRCLK 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,951
Number of Sequences: 37544
Number of extensions: 302041
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)