Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M17
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   108   5e-24
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   108   7e-24
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    28   8.8  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  108 bits (260), Expect = 5e-24
 Identities = 48/87 (55%), Positives = 58/87 (66%)
 Frame = +2

Query: 83  MAXRTXKVGITGXXGTRYGASLRKMVXKXXVXQHAKYTCSFCGXXAMKRSCVGIWSCKRC 262
           +  RT K GI G  GTRYGASLRK + K  V QH+KY C FCG  A+KR  VGIW CK C
Sbjct: 26  LTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 85

Query: 263 KRXVAGGAWVFSTTAASSCRSAVRRLR 343
            +  AGGA+  +T +A + RS +RRLR
Sbjct: 86  GKVKAGGAYTMNTASAVTVRSTIRRLR 112


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  108 bits (259), Expect = 7e-24
 Identities = 48/84 (57%), Positives = 57/84 (67%)
 Frame = +2

Query: 92  RTXKVGITGXXGTRYGASLRKMVXKXXVXQHAKYTCSFCGXXAMKRSCVGIWSCKRCKRX 271
           RT K GI G  GTRYGASLRK + K  V QH+KY C FCG  A+KR  VGIW CK C + 
Sbjct: 34  RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKV 93

Query: 272 VAGGAWVFSTTAASSCRSAVRRLR 343
            AGGA+  +T +A + RS +RRLR
Sbjct: 94  KAGGAYTMNTASAVTVRSTIRRLR 117


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 206 CGXXAMKRSCVGIWSCKRCKRXVAGGAWVFSTTAASSCRSAVRRLR 343
           C    +KR+  G W C RC+        + +  A +S R   RR+R
Sbjct: 58  CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,555
Number of Sequences: 37544
Number of extensions: 182255
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)