Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M15
(919 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0543 + 10427321-10428315,10428440-10429154 34 0.14
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 33 0.24
12_02_0299 - 17051570-17052474,17053542-17053755 26 0.76
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.7
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 31 1.7
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 30 3.0
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.0
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 5.2
04_03_0904 + 20717005-20718087 29 5.2
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 5.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 24 5.7
06_03_0905 + 25843547-25844314 29 6.8
03_01_0515 - 3864796-3865425 29 6.8
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 608 TAPPXGTXPSRI--GXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
T P T P I P PAPD P P P P PP A PP
Sbjct: 19 TPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPAPDMTPPP 68
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 33.5 bits (73), Expect = 0.24
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 617 PXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
P + PS G P+ P P P P P P P SPP
Sbjct: 140 PSASPPSTPGGPAPTPTPTRPAPSPSPTGPPTPSPTNPNLEPSPP 184
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 25.8 bits (54), Expect(2) = 0.76
Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Frame = +2
Query: 617 PXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFP-XPPXAGXRXSPP 751
P P PS P P P PF P PP SPP
Sbjct: 276 PFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPP 321
Score = 24.6 bits (51), Expect(2) = 0.76
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 860 FFSHXXPXPPPAPPXP 907
F+ P PPP PP P
Sbjct: 316 FYPSPPPPPPPPPPPP 331
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/83 (26%), Positives = 24/83 (28%)
Frame = +1
Query: 649 PFRXPRP*XPXPRSXPLXXAVPXSPXGRP*GXSPXLTXXTAPAPTTXXXQQGPATTPXRP 828
P R P P P P +P P P P PAP P P P
Sbjct: 613 PNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPP 672
Query: 829 R*NXXXXXXXXXXXXXXPPPPGP 897
R + PPPP P
Sbjct: 673 RSSSRTPTGAATSSKGPPPPPPP 695
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Frame = +1
Query: 595 PPSMXRPXXRDXPLAYWGPFRXPRP*XPXPRSXPLXXAVPX------SPXGRP*GXSPXL 756
P + P PL+ PFR P P P P P P SP P L
Sbjct: 14 PAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPLSSKLWL 73
Query: 757 TXXTAPAPTTXXXQQGPATT 816
+ +P P Q P+TT
Sbjct: 74 SSKLSPPPPETLEQPEPSTT 93
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 906 GXGGAGGGXGXXWEKK 859
G GG GGG G WEKK
Sbjct: 38 GGGGGGGGGGGGWEKK 53
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 611 APPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
APP P G P PA P P P P PP G + PP
Sbjct: 335 APPP---PPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 623 GTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
G P G A P P P P P P PP PP
Sbjct: 208 GIKPKLKGPKGAPPPPPPPPPSPHRHPAAHPPPPPHHPAPRPP 250
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 5.2
Identities = 21/79 (26%), Positives = 27/79 (34%)
Frame = +1
Query: 595 PPSMXRPXXRDXPLAYWGPFRXPRP*XPXPRSXPLXXAVPXSPXGRP*GXSPXLTXXTAP 774
PP +P + P Y P P+P P P P +P P P P
Sbjct: 257 PPPTYKPQPKPTPTPYTPPTYKPQP-KPTPTPTPYTPTPKPNP---PPTYKP--QPKPTP 310
Query: 775 APTTXXXQQGPATTPXRPR 831
PT Q P +P P+
Sbjct: 311 TPTPYKPQPKPTPSPYTPK 329
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 646 GPFRXPRP*XPXPRSXPLXXAVPXSPXGRP*GXSPXLTXXTAPAPTTXXXQQGP 807
GP R P P P P P +P G P P T P P GP
Sbjct: 263 GPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGP 316
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 23.8 bits (49), Expect(2) = 5.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 866 SHXXPXPPPAPPXP 907
S+ P PPP PP P
Sbjct: 346 SNAPPPPPPPPPPP 359
Score = 23.4 bits (48), Expect(2) = 5.7
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 608 TAPPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPPXSR 760
++PP T SR PS + P P P PP A R +PP +R
Sbjct: 277 SSPPTTTTASRRSLPSMT-SDFFP---PVAAIAAPPAPPPARSRRTPPRTR 323
>06_03_0905 + 25843547-25844314
Length = 255
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 614 PPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
PP T P +G P P P P P +P PP PP
Sbjct: 124 PPVTTPPVVVGPPVTYPTPPVTYPTP---PVTYPTPPTTTPCPPPP 166
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 608 TAPPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXA 730
++PP P P+A P P P P P P PP A
Sbjct: 81 SSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPPA 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,948
Number of Sequences: 37544
Number of extensions: 289275
Number of successful extensions: 1762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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