Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M15
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 25 3.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.2
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 8.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 8.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.1
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 25.0 bits (52), Expect(2) = 3.2
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +2
Query: 608 TAPPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
T P PSRI PS P P P P PP A PP
Sbjct: 469 TPKPAPPPPSRIPNPSPSPQPAEVSKSP---PPPPPLPPIATPSSVPP 513
Score = 23.0 bits (47), Expect(2) = 3.2
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 866 SHXXPXPPPAPPXP 907
S P PPP PP P
Sbjct: 509 SSVPPPPPPPPPPP 522
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 614 PPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
PP P + S P P P PG P PP G + PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 614 PPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
PP P + S P P P PG P PP G + PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 614 PPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
PP P + S P P P PG P PP G + PP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPP--PPPPPGGFKGGPP 368
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 611 APPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
+PP P + P A P P P P P P P S P
Sbjct: 72 SPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 118
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 611 APPXGTXPSRIGXPSAXPAPDXPXPGPFXXXXXFPXPPXAGXRXSPP 751
+PP P + P A P P P P P P P S P
Sbjct: 294 SPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 340
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = +2
Query: 614 PPXGTXP-SRIGXPSAXPAPDXPXP----GPFXXXXXFPXPPXAGXRXSPP 751
PP G+ P + G P PA P P P P PP AG PP
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = +2
Query: 614 PPXGTXP-SRIGXPSAXPAPDXPXP----GPFXXXXXFPXPPXAGXRXSPP 751
PP G+ P + G P PA P P P P PP AG PP
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = +2
Query: 614 PPXGTXP-SRIGXPSAXPAPDXPXP----GPFXXXXXFPXPPXAGXRXSPP 751
PP G+ P + G P PA P P P P PP AG PP
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,192,006
Number of Sequences: 27780
Number of extensions: 203763
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -