Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M12
         (1327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.36 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 38/152 (25%), Positives = 46/152 (30%), Gaps = 3/152 (1%)
 Frame = +1

Query: 730  PSTXNKSSXMNSXXRTXRX---NXSIDXRRTSXQPQSXSXXDXXSLXXXXTKPXNXPXPP 900
            PS    SS  NS  R       N +I+       P   S     +L     +P   P PP
Sbjct: 259  PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP---PPPP 315

Query: 901  NPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQPXXLXXXT 1080
             P       PP    +     P P  PP +   A + P P       R  P P       
Sbjct: 316  PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN-AAGSIPLP----PQGRSAPPPPPPRSAP 370

Query: 1081 XXSXXXRXAXXSXXVSXPXXPXXISPRRTAXA 1176
                       S  VS P  P    P R+A A
Sbjct: 371  STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 895  PPNPXXXPTDHP-PXHXXAXPPXPPSPXXPPXTRLXAXTXP 1014
            PP P   P   P P    A PP PP+   PP     A   P
Sbjct: 447  PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +1

Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPP 984
           P +   PP P   P+  PP    +     P P  PP
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +1

Query: 895  PPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXR 1029
            PP P   P   PP      P  PPS   PP     A + P P  R
Sbjct: 1708 PPPPMSVP---PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
 Frame = +1

Query: 916  PTDHPPXHXXAXP----PXPPSPXXPPXTRLXAXTXPAP 1020
            P DHPP    + P    P  P    PP  +L +   P P
Sbjct: 987  PKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVP 1025



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +1

Query: 895  PPNPXXXPTDHPPXHXXAXPPXP-PSPXXPPXTRLXAXTXPAP 1020
            PP P        P    A PP P PS   PP  +  A   P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,357
Number of Sequences: 5004
Number of extensions: 17399
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)