Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M12
(1327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 36 0.064
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 34 0.20
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.34
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.34
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.34
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.60
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.60
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 33 0.60
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 33 0.60
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 33 0.60
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.79
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.79
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 31 1.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 1.4
Z68314-1|CAA92658.1| 102|Caenorhabditis elegans Hypothetical pr... 31 1.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.8
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 31 2.4
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 31 2.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 2.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 2.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 2.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 3.2
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 3.2
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 4.2
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 4.2
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 4.2
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 4.2
AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical ... 30 4.2
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 5.6
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 9.7
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 9.7
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 29 9.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 9.7
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 35.9 bits (79), Expect = 0.064
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTR 993
P + P PP P PT PP PP P PP R
Sbjct: 240 PSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTRR 278
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 877 PXNXPXPPNPXXX-PTDHPPXHXXAXPPXPPSPXXPPXTR 993
P P P P P D + PP PP P PP R
Sbjct: 217 PSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRR 256
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 34.3 bits (75), Expect = 0.20
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
GG G GGCGG C GG G G GG G G
Sbjct: 87 GGGCGGGGCGGGGGGCGGGGGCGGGGG-GGCGGGGG 121
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.34
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQ 1056
P P +P T PP PP PP+ PP R + P P P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Query: 1057 P 1059
P
Sbjct: 315 P 315
Score = 33.1 bits (72), Expect = 0.45
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXP 1014
P P PP P P PP PP PP+ PP R + P
Sbjct: 233 PAGSPPPPPP---PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.5 bits (73), Expect = 0.34
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQ 1056
P P +P T PP PP PP+ PP R + P P P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Query: 1057 P 1059
P
Sbjct: 336 P 336
Score = 33.1 bits (72), Expect = 0.45
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXP 1014
P P PP P P PP PP PP+ PP R + P
Sbjct: 254 PAGSPPPPPP---PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.34
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQ 1056
P P +P T PP PP PP+ PP R + P P P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Query: 1057 P 1059
P
Sbjct: 321 P 321
Score = 33.1 bits (72), Expect = 0.45
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXP 1014
P P PP P P PP PP PP+ PP R + P
Sbjct: 239 PAGSPPPPPP---PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.60
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSP 972
P P PP P P PP PP PP P
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
Score = 32.7 bits (71), Expect = 0.60
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQP 1059
P PP P T PP PP PPS PP P P R P P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG-GMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.60
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSP 972
P P PP P P PP PP PP P
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
Score = 32.7 bits (71), Expect = 0.60
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQP 1059
P PP P T PP PP PPS PP P P R P P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG-GMPPPPPPGMRYPGGMPPPPP 362
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.60
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 871 TKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPS 969
+ P P PP P PT PP + PP PP+
Sbjct: 83 SNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPA 115
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 32.7 bits (71), Expect = 0.60
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 871 TKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPS 969
+ P P PP P PT PP + PP PP+
Sbjct: 305 SNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPA 337
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPP 984
P P PPNP T PP A PP PP P P
Sbjct: 119 PGGVPAPPNPPR--TCCPPPTPAAPPPPPPPPPPAP 152
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 32.3 bits (70), Expect = 0.79
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 965 GGCGGXAXXCXGGWSVGXXXGLGGXG 888
GGCGG C GG G G GG G
Sbjct: 120 GGCGGGGGGCGGGCGGGGGGGCGGGG 145
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 980 GXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 142 GGGGGGGCGGGGGGCGGGGG-GCGGGGGGCGGGGG 175
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSV-GXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 64 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCG 100
Score = 30.3 bits (65), Expect = 3.2
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGG 894
G G GGCGG C GG G G GG
Sbjct: 155 GCGGGGGGCGGGGGGCGGGGGGGCGGGGGG 184
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 965 GGCGGXAXXC-XGGWSVGXXXGLGGXGXFXG 876
GGCGG C GG G G GG G G
Sbjct: 63 GGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG 93
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 148 GCGGGGGGCGGGGGGCGGG---GGGCGGGGGGGCGG 180
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical protein
C34D4.11 protein.
Length = 136
Score = 32.3 bits (70), Expect = 0.79
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = -3
Query: 1058 GWGXXRAXXPRXXGAGXVWAXRRVXGGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFX 879
GWG R G G W G G G GG GG G G GG G
Sbjct: 63 GWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRG 122
Query: 878 G 876
G
Sbjct: 123 G 123
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +1
Query: 874 KPXNXPXP-PNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXX 1050
+P P P P P P +P P P P P T+L + P P + +
Sbjct: 218 EPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPKPKLK-PKPKPN 276
Query: 1051 PQP 1059
P+P
Sbjct: 277 PKP 279
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 31.5 bits (68), Expect = 1.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXG 888
GG G GGC G C GG + G G GG G
Sbjct: 2131 GGGCG-GGCSGGGNSCGGGCNSGGSCGGGGGG 2161
>Z68314-1|CAA92658.1| 102|Caenorhabditis elegans Hypothetical
protein F07H5.6 protein.
Length = 102
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 983 GGXXGLG-GCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G GLG GCGG GG+ +G G GG G G
Sbjct: 27 GYGLGLGLGCGGGFGGFSGGYGLGYGGGFGGYGGGFG 63
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 1.8
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPP 984
P P PP P P PP PP PP P P
Sbjct: 40 PPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCP 75
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAP 1020
P PP P P PP P PP P PP P P
Sbjct: 35 PPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 895 PPNPXXXPTDHPPXHXXAXPPXPPSPXXPP 984
PP P P PP PP PP P P
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical protein
C31C9.6 protein.
Length = 965
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +1
Query: 871 TKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAP 1020
T P P PP+ P+ P + P PP P P T P P
Sbjct: 461 TTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPP 510
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical protein
C36H8.1 protein.
Length = 418
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 895 PPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAP 1020
PP P P + P A PP PP+P P + PAP
Sbjct: 177 PPPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAPEPV-PAP 217
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPPXHXXAXPPXPP--SPXXPPXTRLXAXTXPAPXXRGXXARXXPQP 1059
P PP P P PP PP PP PP A P P A P+P
Sbjct: 75 PPPPGPGGIPPP-PPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRP 132
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical protein
B0280.13 protein.
Length = 616
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +1
Query: 871 TKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAP 1020
T P P PP+ P+ P + P PP P P T P P
Sbjct: 468 TTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPP 517
Score = 29.9 bits (64), Expect = 4.2
Identities = 16/61 (26%), Positives = 21/61 (34%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQ 1056
P P P P P + PP P P PP +R+ P+P + P
Sbjct: 441 PPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRI---PNPSPSPQPAEVSKSPP 497
Query: 1057 P 1059
P
Sbjct: 498 P 498
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 2.4
Identities = 31/129 (24%), Positives = 37/129 (28%)
Frame = +1
Query: 682 APPQXDKPXXXXDXXXPSTXNKSSXMNSXXRTXRXNXSIDXRRTSXQPQSXSXXDXXSLX 861
APPQ P+ SS + R R N + + S S S
Sbjct: 1278 APPQNGSDPPQPSESCPAPPKNSSKKRNNRRGNRRNTNEHIQANHEDSDSFSTSRSSS-- 1335
Query: 862 XXXTKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXA 1041
+ P P PP P T PP PP PP T + P P
Sbjct: 1336 --PSPPPPPPPPPPPSDDLTPVPP------PPPPPPTMSKAPTGVPLPVPPPPPLFSPSM 1387
Query: 1042 RXXPQPXXL 1068
P P L
Sbjct: 1388 ILPPPPPPL 1396
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSV-GXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCG 118
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 102 GCGGGGGGCGGGGGGCGGGGG-GCGGGGGGCGGGGG 136
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 109 GCGGGGGGCGGGGGGCGGG---GGGCGGGGGGGCGG 141
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGG 894
G G GGCGG C GG G G G
Sbjct: 116 GCGGGGGGCGGGGGGCGGGGGGGCGGGSSG 145
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSV-GXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCG 118
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 102 GCGGGGGGCGGGGGGCGGGGG-GCGGGGGGCGGGGG 136
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXGXFXG 876
G G GGCGG C GG G G GG G G
Sbjct: 109 GCGGGGGGCGGGGGGCGGG---GGGCGGGGGGGCGG 141
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 983 GGXXGLGGCGGXAXXCXGGWSVGXXXGLGG 894
G G GGCGG C GG G G G
Sbjct: 116 GCGGGGGGCGGGGGGCGGGGGGGCGGGSSG 145
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXRGXXARXXPQP 1059
P PP PP P P P PP R T P+P R P+P
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRR-PPMTPPSPQRRPPRTPPSPEP 180
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +1
Query: 895 PPNPXXXPTDHPPXHXXAXPPXPPS-PXXPPXTRL 996
PP+P P PP PP P P PP RL
Sbjct: 164 PPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRL 198
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDH-PPXHXXAXPPXPPSPXXPPXTRLXAXTXPAPXXR 1029
P P P P P PP PP PP P PP + + P R
Sbjct: 48 PMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQR 99
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAX-PPXPPSPXXPP 984
P N PP P PP PP PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAX-PPXPPSPXXPP 984
P N PP P PP PP PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPP 162
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.9 bits (64), Expect = 4.2
Identities = 25/109 (22%), Positives = 32/109 (29%)
Frame = +1
Query: 667 RXPXPAPPQXDKPXXXXDXXXPSTXNKSSXMNSXXRTXRXNXSIDXRRTSXQPQSXSXXD 846
R P P PP +P P T + S T + + P+
Sbjct: 480 RDPTPTPPPSPQPVYRLPSPKPVTPEP---LPSPTIT-----DVSLAIATPSPEESDDDQ 531
Query: 847 XXSLXXXXTKPXNXPXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTR 993
L P P PP P PT P P P+P PP +
Sbjct: 532 ELILPSPEPSPVREPTPPPPPREPTPREPT-PEPEPVREPTPPPPPPAK 579
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +1
Query: 877 PXNXPXPPNPXXXPTDHPPXHXXAX-PPXPPSPXXPP 984
P N PP P PP PP PP P PP
Sbjct: 126 PGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPP 162
>AF022983-5|AAK82915.1| 79|Caenorhabditis elegans Hypothetical
protein R13D11.10 protein.
Length = 79
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 995 RRVXGGXXGLGGCGGXAXXCXGGWSVGXXXGLGGXG 888
+R GG G GG GG GG+ G+GG G
Sbjct: 33 KRQWGGWGGRGGYGGYGYRPYGGYGGWGGRGMGGWG 68
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +1
Query: 889 PXPPNPXXX--PTDHPPXHXXAXPPXPPSPXXPPXTRL 996
P PP P P H P PP P +P PP L
Sbjct: 138 PGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPPKSL 175
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Frame = +1
Query: 889 PXPPNPXXXPTD-----HPPXHXXAXPPXPPSPXXPP 984
P PP P P H A PP PP P PP
Sbjct: 203 PGPPGPAGQPGQPGEPGHSDTSSTAGPPGPPGPGGPP 239
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical protein
C15A11.1 protein.
Length = 303
Score = 28.7 bits (61), Expect = 9.7
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Frame = +1
Query: 871 TKPXNXPXPPNPXXXPTDHPPXHXXAX----PPXPPSPXXPPXTRLXAXTXPAPXXRG 1032
T N P P P P P A PP PP P PP A AP G
Sbjct: 176 TTSTNEPGSPGPAGPPGPAGPAGEDAAAPESPPGPPGPPGPPGKDGEAGAPGAPGGPG 233
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPP-XHXXAXPPXPPSPXXPP 984
P PP+P P PP PP PP+ PP
Sbjct: 243 PPPPSPVCMPPPPPPCPMPIPCPPPPPACSCPP 275
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 889 PXPPNPXXXPTDHPPXHXXAXPPXPPSPXXPPXTRLXAXTXPAP 1020
P P P P PP PP P P PP P P
Sbjct: 686 PGQPRPAGLPPGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPP 729
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.132 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,158,993
Number of Sequences: 27780
Number of extensions: 143016
Number of successful extensions: 1317
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3715184046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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