Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M10
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    33   0.072
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    32   0.095
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    32   0.13 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    31   0.22 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    29   0.67 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.89 
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    29   1.2  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    29   1.2  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    29   1.2  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.7  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   2.7  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   8.3  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 509 QKKMP-VSSLSNLGNTCFLNSVLYTLRY 589
           +K++P    LSNLGNTC++NS L  L +
Sbjct: 304 EKRVPGTCGLSNLGNTCYMNSALQCLTH 331


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 533 LSNLGNTCFLNSVLYTLRYAPRFLHNL 613
           L NLGNTCF+NSVL  +   P  +  L
Sbjct: 127 LVNLGNTCFMNSVLQLMTQTPPLVQYL 153


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 527 SSLSNLGNTCFLNSVLYTLRYAP 595
           S L NLGNTC++NS +  LR  P
Sbjct: 100 SGLINLGNTCYMNSTVQMLRAIP 122


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 558 KQVFPKLDSEDTGIFFCTPPY*VSGGWWPFN-MTELDSPSSRIASSGFNVLSECFRVAVS 382
           K +  K DSED   +  +  + + G  + +  +TE D  S+ I   G   + E FRV VS
Sbjct: 238 KYIDVKTDSED--FWDASEEHSIKGEEFHYKKITEGDEISNEIDPFGIGSIREVFRVLVS 295

Query: 381 LFTVGPADFDDSLR 340
               G   F D+++
Sbjct: 296 FIDFGKQKFSDNIK 309


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 539 NLGNTCFLNSVLYTLRYAPRFLHNLHHL 622
           N GN CF+NS+L  L Y   F + L  +
Sbjct: 137 NTGNICFMNSILQALMYCVPFYNLLKQI 164


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 533 LSNLGNTCFLNSVLYTLRYAPRFLHNLH 616
           L+N GNTC+++SVL +L +   F  +L+
Sbjct: 43  LTNYGNTCYVSSVLVSLYHLKPFRDSLN 70


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 506 VQKKMPVSSLSNLGNTCFLNSVL 574
           + K++ +  L NLGN+C++NS L
Sbjct: 272 INKEIGLCGLYNLGNSCYMNSAL 294


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 533 LSNLGNTCFLNSVLYTL 583
           L+NLGNTC++N VL  L
Sbjct: 74  LTNLGNTCYMNCVLQCL 90


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 524 VSSLSNLGNTCFLNSVLYTLRYAPRF-LHNLHHLVSDLASVEQKLGSIRLKSSSLGRSAA 700
           ++ L NLGN+C+L S + +L     F +H L +L +   SV Q   +  L+   LG+ A 
Sbjct: 299 LTGLKNLGNSCYLASTMQSLFSIKEFAIHEL-NLFNTYNSVCQ-TPTTDLQ-CQLGKLAD 355

Query: 701 GLVS 712
           GLVS
Sbjct: 356 GLVS 359


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 509 QKKMPVSSLSNLGNTCFLNSVLYTLRYAPRFLHNLHHLVSD 631
           +K+     L N G TC++NS+L +L +   F   ++ + +D
Sbjct: 224 KKETGYVGLKNQGATCYMNSLLQSLFFTNIFRKTVYKIPTD 264


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 500 GGVQKKMPVSS--LSNLGNTCFLNSVLYTL 583
           G   KK  V S  L NLG TCF NS L  L
Sbjct: 197 GKSSKKYKVISPGLKNLGATCFFNSTLQVL 226


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 377 NRDTATLKHSDRTLNPELAILEEGESSSVMLNGHHPPDTQYGGVQKKMPVSSLS 538
           ++D +TL  S  +++ E+ + E+G +SSV +N         G +++     S+S
Sbjct: 185 DKDPSTLVQS--SIDKEIQVKEDGTTSSVAVNAETAVQNVNGTIKESQGTESIS 236


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 533 LSNLGNTCFLNSVLYTLRYAPRFLHNLHHLVSD 631
           L N G TC++NS+L +L     F   ++ + +D
Sbjct: 215 LKNQGATCYMNSLLQSLYIIHAFRRIVYQIPTD 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,855
Number of Sequences: 5004
Number of extensions: 64451
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)