Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_M07
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.012
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.012
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.62
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.82
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.82
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.82
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.82
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.82
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.4
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.4
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.5 bits (83), Expect = 0.012
Identities = 27/118 (22%), Positives = 27/118 (22%)
Frame = +3
Query: 504 PTXXPXXPXXXXXXPXPPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXX 683
P P P P P P P P P P PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Query: 684 XPXXXXPXXXXXXPPPPPXXXPXXXXPXXXXXXPPXXXPXXXXXXXXXXXXXXXPXPP 857
P P PPPPP P P PP P P PP
Sbjct: 321 PPSRFGPPGMGGMPPPPP---PGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/91 (23%), Positives = 21/91 (23%)
Frame = +2
Query: 515 PXPPXXXXXXPXPXXXPXXXPXXPXPXXXXXXXPXXXPPXXXXXXXXPXXXPXPXXXXXX 694
P PP P P P P P P PP P P P
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPP-PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 695 XXXXXXXPXPPXPXXXXPPXPXXXXXXXXPP 787
P PP PP PP
Sbjct: 357 SAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.5 bits (83), Expect = 0.012
Identities = 27/118 (22%), Positives = 27/118 (22%)
Frame = +3
Query: 504 PTXXPXXPXXXXXXPXPPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXX 683
P P P P P P P P P P PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Query: 684 XPXXXXPXXXXXXPPPPPXXXPXXXXPXXXXXXPPXXXPXXXXXXXXXXXXXXXPXPP 857
P P PPPPP P P PP P P PP
Sbjct: 331 PPSRFGPPGMGGMPPPPP---PGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/91 (23%), Positives = 21/91 (23%)
Frame = +2
Query: 515 PXPPXXXXXXPXPXXXPXXXPXXPXPXXXXXXXPXXXPPXXXXXXXXPXXXPXPXXXXXX 694
P PP P P P P P P PP P P P
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPP-PSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 695 XXXXXXXPXPPXPXXXXPPXPXXXXXXXXPP 787
P PP PP PP
Sbjct: 367 SAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 172 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 276
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 157 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 327
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 328 GRQHCVTVDCCCHGS 372
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +1
Query: 157 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 327
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 328 GRQHCVTVDCCCHGS 372
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/81 (24%), Positives = 20/81 (24%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXP 725
P PP P P P PP PP P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 726 PPPPXXXPXXXXPXXXXXXPP 788
PPPP P P PP
Sbjct: 297 PPPP--PPPRGSPPTGSLPPP 315
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/83 (22%), Positives = 19/83 (22%)
Frame = +3
Query: 552 PPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPP 731
PP P P P P PP PP P PPP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Query: 732 PPXXXPXXXXPXXXXXXPPXXXP 800
PP PP P
Sbjct: 332 PPRQKRQAPERSPPTGSPPTGSP 354
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/81 (24%), Positives = 20/81 (24%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXP 725
P PP P P P PP PP P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 726 PPPPXXXPXXXXPXXXXXXPP 788
PPPP P P PP
Sbjct: 318 PPPP--PPPRGSPPTGSLPPP 336
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/83 (22%), Positives = 19/83 (22%)
Frame = +3
Query: 552 PPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPP 731
PP P P P P PP PP P PPP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Query: 732 PPXXXPXXXXPXXXXXXPPXXXP 800
PP PP P
Sbjct: 353 PPRQKRQAPERSPPTGSPPTGSP 375
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/81 (24%), Positives = 20/81 (24%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXP 725
P PP P P P PP PP P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 726 PPPPXXXPXXXXPXXXXXXPP 788
PPPP P P PP
Sbjct: 303 PPPP--PPPRGSPPTGSLPPP 321
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/83 (22%), Positives = 19/83 (22%)
Frame = +3
Query: 552 PPXXPXXXPXXPXXXXXXXXPXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPP 731
PP P P P P PP PP P PPP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Query: 732 PPXXXPXXXXPXXXXXXPPXXXP 800
PP PP P
Sbjct: 338 PPRQKRQAPERSPPTGSPPTGSP 360
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXP-XXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXX 722
P PP P P P P P PP PP P P
Sbjct: 726 PPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 723 PPPPP 737
PPPPP
Sbjct: 784 PPPPP 788
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/82 (24%), Positives = 20/82 (24%)
Frame = +3
Query: 612 PXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPPPPXXXPXXXXPXXXXXXPPX 791
P P PP PP P P PPPPP P PP
Sbjct: 715 PPPGLPPITGGPPPPPP--------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 792 XXPXXXXXXXXXXXXXXXPXPP 857
P P PP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXP-XXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXX 722
P PP P P P P P PP PP P P
Sbjct: 726 PPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 723 PPPPP 737
PPPPP
Sbjct: 784 PPPPP 788
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/82 (24%), Positives = 20/82 (24%)
Frame = +3
Query: 612 PXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPPPPXXXPXXXXPXXXXXXPPX 791
P P PP PP P P PPPPP P PP
Sbjct: 715 PPPGLPPITGGPPPPPP--------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 792 XXPXXXXXXXXXXXXXXXPXPP 857
P P PP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPP 788
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 370 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 218
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 546 PXPPXXPXXXPXXPXXXXXXXXPXP-XXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXX 722
P PP P P P P P PP PP P P
Sbjct: 309 PPPPPPPGGLP--PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 723 PPPPP 737
PPPPP
Sbjct: 367 PPPPP 371
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/82 (24%), Positives = 20/82 (24%)
Frame = +3
Query: 612 PXPXXPPXXXXXXXXPPXXXXXXXXPXXXXPXXXXXXPPPPPXXXPXXXXPXXXXXXPPX 791
P P PP PP P P PPPPP P PP
Sbjct: 298 PPPGLPPITGGPPPPPP--------PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 792 XXPXXXXXXXXXXXXXXXPXPP 857
P P PP
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPPP 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,853
Number of Sequences: 27780
Number of extensions: 259254
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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