Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M05
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    29   0.89 
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    28   1.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   6.3  

>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 114 LWDLSTLPYGQYLTLEQLFSQLQRSVCHICGLFHKVVLKKIRCLGKY 254
           LWD  T+ +GQ    + + ++ Q+S+        + ++KK +  G+Y
Sbjct: 332 LWDFPTIEFGQESWPKDMDAEFQKSIAQWISNDSRSLIKKYQSRGRY 378


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 37  SLXFESSVTPWTNPSGXXYSVPHISSFGIFRLCPMGNI 150
           +L FESSV     PS      PH+ SFG   LC  G I
Sbjct: 47  NLHFESSVLHLRGPSDHLTPQPHVDSFGNV-LCWNGEI 83


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 138 YGQYLTLEQL--FSQLQRSVCHICGLFHKVVLKKIRCLGK 251
           Y   LTL+Q   FS  Q   C    + H  V  KI C+GK
Sbjct: 10  YRSLLTLKQWEKFSLFQWQECPSIKILHDSVGNKISCIGK 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,910
Number of Sequences: 5004
Number of extensions: 50470
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)