Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M02
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    30   3.0  
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275...    29   4.0  
01_01_0570 - 4231100-4232560                                           29   4.0  
10_01_0271 - 2881059-2881409                                           29   5.3  
07_03_0558 + 19461369-19462448                                         29   5.3  
10_08_0217 - 15962192-15962884                                         26   8.6  
07_03_0177 - 14770777-14772045                                         28   9.3  
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166           28   9.3  

>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 308 AVVEVGGP--DGAEHVLVVAGERDLQGGPGGSVRV 210
           A V  GGP  DGA+ V+ V     L G P GS RV
Sbjct: 92  AYVTTGGPIPDGADAVVQVEDTEQLAGAPDGSKRV 126


>07_01_0370 +
           2749353-2749786,2749949-2750346,2750435-2750519,
           2751200-2751314,2751538-2751591
          Length = 361

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 323 SAELXAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 168
           +A L + V + G   A  V++ AG R   GG GG V VH  AA  SP  T RH
Sbjct: 3   AARLASTV-LAGRRRAASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52


>01_01_0570 - 4231100-4232560
          Length = 486

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = -2

Query: 740 GGXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAG 618
           GG  G G    GG+      GGGGG   G  +G  F    G
Sbjct: 95  GGLGGSGGLGGGGMGGSGGFGGGGGGGVGGGVGAGFGSGGG 135



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 707 GGIXXLWEXGGGGGAXXGRXIGNRFXLRAG 618
           GGI      G GGGA  G  +GN F + AG
Sbjct: 320 GGIGGGASGGFGGGAGIGEGVGNGFGVGAG 349


>10_01_0271 - 2881059-2881409
          Length = 116

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = -2

Query: 359 PVYVXQSEPCGGSAELXAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSPR 180
           P  + Q   C        V+E G PD A  VL  A    + GG GGS R    +A  +PR
Sbjct: 34  PQELHQHHACASWTTKTTVIETGPPDLAVAVLGTARCLAISGG-GGSPRRWLPSATTAPR 92


>07_03_0558 + 19461369-19462448
          Length = 359

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/42 (42%), Positives = 18/42 (42%)
 Frame = -2

Query: 743 QGGXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAG 618
           QGG  G G    GGI      GGGGG   G   G  F   AG
Sbjct: 223 QGGGFGAGGGAGGGIGGGGGFGGGGGGGLGGGHGGGFGGGAG 264



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 740 GGXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAG 618
           GG  G G    GG+      GGGGG   G   G  F   AG
Sbjct: 296 GGGAGVGGGAGGGVGGGGGFGGGGGGGLGGGHGGGFGAGAG 336


>10_08_0217 - 15962192-15962884
          Length = 230

 Score = 25.8 bits (54), Expect(2) = 8.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 740 GGXPGKGWCXXGGIXXLWEXGGGGGAXXG 654
           G   G G+   GG    +  GGGGG   G
Sbjct: 51  GSGSGSGYGQAGGSGGAYASGGGGGGGGG 79



 Score = 21.0 bits (42), Expect(2) = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 680 GGGGGAXXGRXIGN 639
           GGGGGA  G   G+
Sbjct: 118 GGGGGANGGSGYGS 131


>07_03_0177 - 14770777-14772045
          Length = 422

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 740 GGXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAG 618
           GG  GKG    GG       GGGGG   G  +G    L  G
Sbjct: 284 GGGIGKGGGIGGGFGKGGGLGGGGGLGGGGGLGGGSGLGGG 324


>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
          Length = 545

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 221 SVRVHCEAAGLSPRTCRHVST 159
           S+R+HC A  L+PR CR   T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,620
Number of Sequences: 37544
Number of extensions: 320045
Number of successful extensions: 1719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)