Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M02
         (936 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z18284-1|CAA79158.1|  398|Homo sapiens Oct-6 transcription facto...    33   1.1  
L26494-1|AAA59965.1|  448|Homo sapiens oct-6 protein.                  33   1.1  
AL139158-1|CAI23136.1|  451|Homo sapiens POU domain, class 3, tr...    33   1.1  

>Z18284-1|CAA79158.1|  398|Homo sapiens Oct-6 transcription factor
           protein.
          Length = 398

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -2

Query: 401 PEAGXAGPGQAQPVPVYVXQSEPCGGSAELXAVVEVGG---PDGAEHVLVVAG-ERDLQG 234
           P  G +G  Q QP+ +Y   + P GG   L  ++  GG     G  H L   G E  L+ 
Sbjct: 90  PSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEP 149

Query: 233 GPGGSVRVHCEAAG 192
            P   +  H  A G
Sbjct: 150 SPPPHLGAHGHAHG 163


>L26494-1|AAA59965.1|  448|Homo sapiens oct-6 protein.
          Length = 448

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -2

Query: 401 PEAGXAGPGQAQPVPVYVXQSEPCGGSAELXAVVEVGG---PDGAEHVLVVAG-ERDLQG 234
           P  G +G  Q QP+ +Y   + P GG   L  ++  GG     G  H L   G E  L+ 
Sbjct: 140 PSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEP 199

Query: 233 GPGGSVRVHCEAAG 192
            P   +  H  A G
Sbjct: 200 SPPPHLGAHGHAHG 213


>AL139158-1|CAI23136.1|  451|Homo sapiens POU domain, class 3,
           transcription factor 1 protein.
          Length = 451

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -2

Query: 401 PEAGXAGPGQAQPVPVYVXQSEPCGGSAELXAVVEVGG---PDGAEHVLVVAG-ERDLQG 234
           P  G +G  Q QP+ +Y   + P GG   L  ++  GG     G  H L   G E  L+ 
Sbjct: 143 PSPGASGGHQPQPLGLYAQAAYPGGGGGGLAGMLAAGGGGAGPGLHHALHEDGHEAQLEP 202

Query: 233 GPGGSVRVHCEAAG 192
            P   +  H  A G
Sbjct: 203 SPPPHLGAHGHAHG 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,821,818
Number of Sequences: 237096
Number of extensions: 1536198
Number of successful extensions: 15519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15465
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)