Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_M02
         (936 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   6.3  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 31/129 (24%), Positives = 32/129 (24%), Gaps = 1/129 (0%)
 Frame = -2

Query: 926 GGXGXVXWXXEPGXGXGGGXGXXVRXXXXXXXXXXXXXXXXXXXXXVPCXXGDCXXGXXC 747
           GG G        G G GGG G                           C  G    G  C
Sbjct: 70  GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGC 129

Query: 746 PQG-GXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAGGXXXXXXXXXXXXXXG 570
             G G  G G C  GG       GGG G   G   G       GG              G
Sbjct: 130 GGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189

Query: 569 CAHLGXEHV 543
           C     E +
Sbjct: 190 CGRKKREAI 198


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -2

Query: 773 GDCXXGXXCPQGGXPGKGWCXXGGIXXLWEXGGGGGAXXG 654
           G C  G  C  GG  G G    GG       GGGG A  G
Sbjct: 100 GGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGGYASGG 139



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/56 (35%), Positives = 21/56 (37%)
 Frame = -2

Query: 782 CXXGDCXXGXXCPQGGXPGKGWCXXGGIXXLWEXGGGGGAXXGRXIGNRFXLRAGG 615
           C  G C  G     GG  G G C  GG       GGGGG   G   G      +GG
Sbjct: 90  CGGGGCGGGG----GGCGGGGGCGGGGGGGC--GGGGGGGCGGGGGGGGGGYASGG 139


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 864 PXPPPXPXTWLXPPXHXPXP 923
           P PPP P  +  PP H P P
Sbjct: 132 PPPPPPPPHYPPPPPHYPPP 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,121
Number of Sequences: 27780
Number of extensions: 198475
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)