Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L23
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    67   4e-12
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    55   1e-08
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    54   2e-08
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   2.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.7  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   6.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.5  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +2

Query: 272 KSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGP--LR 445
           K Y GY  V    D + FFW+F +   + +N PV++WL GGPG +SL GLF E GP  + 
Sbjct: 587 KQYTGYLDVED--DRHLFFWFFESR-NDPENDPVVLWLNGGPGCSSLTGLFMELGPSSIN 643

Query: 446 VRNKXFERRKYNWALSHHIIYIDNPV 523
           +     E   ++W  +  +I++D P+
Sbjct: 644 IETLKPEYNPHSWNSNASVIFLDQPI 669



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/55 (23%), Positives = 20/55 (36%)
 Frame = +3

Query: 567 VDETXVGEXLYSTXXXXXXXXXXXXXXXXXVTGXSYGGXYVPALAYTIXKKNPSA 731
           +D    G+ +Y+                  + G SY G Y+P  A  I + N  A
Sbjct: 681 LDTVTAGKDVYAFLNLFFAKFPQYAHLDFHIAGESYAGHYIPQFAKEIMEHNQGA 735


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +2

Query: 233 RLARVPFTESLRXKSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSL 412
           R+  +P  +    + Y+GY   N   D + F+ Y PA+V +      IVWLQGGPG    
Sbjct: 60  RIKSLPEFKGSLPELYSGYLEANS--DKSLFYTYAPAVVDSET---FIVWLQGGPGCAGT 114

Query: 413 YGLFTENGPLRV--RNKXFERRKYNWALSHHIIYIDNP 520
            G F+ENGP+ +   +        +W    +++++D P
Sbjct: 115 LGFFSENGPIEISQSSPSPSLNPESWTNFANMLWLDQP 152


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 272 KSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPLRV- 448
           + +AG+       D + FFW F ++ P  ++  ++ WL GGPG +S  G   E GP R+ 
Sbjct: 44  RMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSIL-WLNGGPGCSSEDGSLMEVGPFRLD 102

Query: 449 RNKXFERRKYNWALSHHIIYIDNPV 523
            N  F+     W    +++++D P+
Sbjct: 103 DNNTFQLNPGRWDELGNLLFVDQPL 127


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 251  FTESLRXKSYAGYFTVNKTYDSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYG 418
            FTE         Y    K +   ++ +  PA +   K+  +I+WL   PG  + +G
Sbjct: 888  FTEREAPPVEVEYPPGTKAFHLGEYNYGRPAQITGCKDNKLIIWLSTAPGLDAQWG 943


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 243 EYHLLKACALK--VMXATSR*IRLTTPTSSSGTFL 341
           E+H + +  LK  VM    R +RLT P   SGT++
Sbjct: 240 EWHSMLSSVLKGDVMQTEKRRLRLTEPDGHSGTYI 274


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 343 SRKVPEELVGVVSLIYREVAXITFXAQAFSKWYSG*TPPCSDVTAFHIWRKEQRL 179
           S K   E   +V+  +R ++ +   A+  S W    T    DV  F +W K + L
Sbjct: 342 STKTVLEFDDIVTQTHRAISQVVKQAKDNSVWIKILTYSAIDVEEFQLWLKRKNL 396


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 252  LLKACALKVMXATSR*IRLTTPTSSSGTFLLWFRTAKTHRLSSGSKEAPALHLCMDSSQK 431
            LL   A +++  T    RL   TS+S T+LL   +A  H +SS     P+L   ++   K
Sbjct: 2264 LLFVSAHEILDLTEEVNRLAVSTSNS-TYLLKSASAVYHNVSSFKGSTPSLWNLLNQFSK 2322

Query: 432  TVL 440
             ++
Sbjct: 2323 FLI 2325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,959
Number of Sequences: 5004
Number of extensions: 57090
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)