Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L21
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.85 
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    27   2.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   6.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   7.9  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   7.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 299 PAFPKSPSSFCPKVPKTXPPPICLSQVTSRGCR 201
           P+ P  PS+  P  PK  PPP+  + V +   R
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 77  YNSKXIQICFISSLQLWCVLTQKFTDLL 160
           Y+ K +++  +S +  W VLTQ +TD L
Sbjct: 153 YHRKQMELQMLSFVAEWLVLTQHYTDAL 180


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 290 PKSPS-SFCPKVPKTXPPPICLSQVTS 213
           P SP  SF  +VP   PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 530 AEKWVXLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 417
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 92  IQICFISSLQLWCVLTQKFTDLLITRKXTRSAGNPQGDTLVTSLGTNKWGEARSL 256
           + I  +  + LW +  +KF D+ +  +    AGN +G  L   LGT +   A+ L
Sbjct: 199 LDISDVCGMNLWDIQNEKF-DIRLLEEV---AGNSKGPDLANKLGTVEINGAKHL 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,422
Number of Sequences: 5004
Number of extensions: 48959
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)