Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L19
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   112   7e-26
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   112   7e-26
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   6.2  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  112 bits (269), Expect = 7e-26
 Identities = 52/74 (70%), Positives = 59/74 (79%)
 Frame = +1

Query: 148 PSVFSKXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEE 327
           P   SK Y  PRRPFE ARLD  LK  G YGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 328 KDPKRLFEGNALLR 369
           KDPKRLFEGNA++R
Sbjct: 65  KDPKRLFEGNAIIR 78



 Score = 85.4 bits (202), Expect = 1e-17
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = +2

Query: 371 RLVRIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKSXXXXXXXXXXXXXXVRX 550
           RLVR+G+LDE  MKLDYVL L+IE FLERRL TQVFK GLAKS              V  
Sbjct: 79  RLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGK 138

Query: 551 XVVXIPSFIVRLDS 592
            +V +PSF+VRLD+
Sbjct: 139 QIVNVPSFVVRLDA 152



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 600 HXXFSLXSPFXGGRPXRVXRXXLRXGQXGG 689
           H  F+L SP+ GGRP R  R  LR  Q GG
Sbjct: 155 HIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  112 bits (269), Expect = 7e-26
 Identities = 52/74 (70%), Positives = 59/74 (79%)
 Frame = +1

Query: 148 PSVFSKXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEE 327
           P   SK Y  PRRPFE ARLD  LK  G YGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 328 KDPKRLFEGNALLR 369
           KDPKRLFEGNA++R
Sbjct: 65  KDPKRLFEGNAIIR 78



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = +2

Query: 371 RLVRIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKSXXXXXXXXXXXXXXVRX 550
           RLVR+G+LDE  MKLDYVL L+IE FLERRL TQVFK GLAKS              V  
Sbjct: 79  RLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGK 138

Query: 551 XVVXIPSFIVRLDS 592
            +V +PSF+VRLD+
Sbjct: 139 QIVNVPSFVVRLDT 152



 Score = 33.1 bits (72), Expect = 0.054
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 600 HXXFSLXSPFXGGRPXRVXRXXLRXGQXGG 689
           H  F+L SP+ GGRP R  R  LR  Q GG
Sbjct: 155 HIDFALSSPYGGGRPGRCKRKRLR-SQEGG 183


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 256 EVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRSSG 378
           ++  + Y   + R  AR+L T+   +PK LF+GN LL+ +G
Sbjct: 86  QIRTIFYDKYKDRPIARDLGTVCLHNPK-LFQGNKLLKRTG 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,374
Number of Sequences: 5004
Number of extensions: 29282
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)