Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_L19
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 102 3e-22
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 102 3e-22
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 101 8e-22
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 73 2e-13
07_03_1358 - 25984897-25984997,25985623-25985650 38 0.008
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 29 6.5
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 102 bits (245), Expect = 3e-22
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +1
Query: 157 FSKXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 336
+ K + PRRP+EK RLD LK +G YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 337 KRLFEGNALLRSSGSY 384
+R+FEG ALLR Y
Sbjct: 70 RRIFEGEALLRRMNRY 85
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/74 (47%), Positives = 44/74 (59%)
Frame = +2
Query: 371 RLVRIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKSXXXXXXXXXXXXXXVRX 550
R+ R G+L + KLDYVL L +E FL RRL T VFKAG+AKS V
Sbjct: 81 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 140
Query: 551 XVVXIPSFIVRLDS 592
+V IPSF+VR++S
Sbjct: 141 QIVNIPSFMVRVES 154
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 600 HXXFSLXSPFXGGRPXRVXRXXLRXGQXGG 689
H FSL SPF GG P RV R + GG
Sbjct: 157 HIDFSLTSPFGGGPPGRVKRKNQKKASGGG 186
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 102 bits (245), Expect = 3e-22
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +1
Query: 157 FSKXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 336
+ K + PRRP+EK RLD LK +G YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 337 KRLFEGNALLRSSGSY 384
+R+FEG ALLR Y
Sbjct: 286 RRIFEGEALLRRMNRY 301
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/74 (47%), Positives = 44/74 (59%)
Frame = +2
Query: 371 RLVRIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKSXXXXXXXXXXXXXXVRX 550
R+ R G+L + KLDYVL L +E FL RRL T VFKAG+AKS V
Sbjct: 297 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 356
Query: 551 XVVXIPSFIVRLDS 592
+V IPSF+VR++S
Sbjct: 357 QIVNIPSFMVRVES 370
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 600 HXXFSLXSPFXGGRPXRVXRXXLRXGQXGG 689
H FSL SPF GG P RV R + GG
Sbjct: 373 HIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 101 bits (242), Expect = 8e-22
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = +1
Query: 163 KXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 342
K + PRRP+EK RLD LK +G YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 343 LFEGNALLRSSGSY 384
+FEG ALLR Y
Sbjct: 95 IFEGEALLRRMNRY 108
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/74 (47%), Positives = 44/74 (59%)
Frame = +2
Query: 371 RLVRIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKSXXXXXXXXXXXXXXVRX 550
R+ R G+L + KLDYVL L +E FL RRL T VFKAG+AKS V
Sbjct: 104 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 163
Query: 551 XVVXIPSFIVRLDS 592
+V IPSF+VR++S
Sbjct: 164 QIVNIPSFMVRVES 177
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 600 HXXFSLXSPFXGGRPXRVXRXXLRXGQXGG 689
H FSL SPF GG P RV R + GG
Sbjct: 180 HIDFSLTSPFGGGPPGRVKRKNQKKASGGG 209
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +1
Query: 157 FSKXYVXPRRPFEKARLDQXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 336
+ K + PRRP+EK R D LK G YGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 337 KRLFEGNALLRSSGSYWSTG 396
+R+FEG ALLR Y G
Sbjct: 59 RRIFEGEALLRHMNRYGLLG 78
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +2
Query: 380 RIGVLDEKXMKLDYVLGLKIEXFLERRLXTQVFKAGLAKS 499
R G+L E KLDYVL L +E FL+ RL T VFK G KS
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKS 112
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 157 FSKXYVXPRRPFEKARLDQXLKXIGXYG 240
+ K + PRRP+EK RLD LK +G YG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 211 QXLKXIGXYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 333
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,870
Number of Sequences: 37544
Number of extensions: 221606
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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