Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_L17
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 29 6.1
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 6.1
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 29 6.1
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 28 8.1
>Z83114-7|CAJ76943.1| 525|Caenorhabditis elegans Hypothetical
protein K09B11.5b protein.
Length = 525
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 585 SEVAKPDRTIKIPGVSPLXXSPRAALPVSDPXPLTGIPVRLSPLREXVAPSH 740
S AK T+K P P+ P + PVS P P++ PV P+ + P H
Sbjct: 461 SHTAK-SHTVKSPMTPPVSQPPVSQPPVSQP-PVSQPPVSQPPVSQPPVPQH 510
>Z83114-6|CAB63235.1| 589|Caenorhabditis elegans Hypothetical
protein K09B11.5a protein.
Length = 589
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 585 SEVAKPDRTIKIPGVSPLXXSPRAALPVSDPXPLTGIPVRLSPLREXVAPSH 740
S AK T+K P P+ P + PVS P P++ PV P+ + P H
Sbjct: 525 SHTAK-SHTVKSPMTPPVSQPPVSQPPVSQP-PVSQPPVSQPPVSQPPVPQH 574
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 453 RG*RRKEHVSKRPAKGQE---P*KGRVAGVFXXXXXXXRASQKSTLKSEVAKPDRTIKIP 623
RG R ++ S P + P G+ +F +S T A P+ ++IP
Sbjct: 208 RGGREEDSRSSSPMEAPPVGGPLYGKRLSLFQPRKPSTTSSSGGTAIDTTAIPENVLEIP 267
Query: 624 GVSPLXXSPRAALPVSDPXPLTGIPVRLSP 713
S P+A V P T +P + P
Sbjct: 268 NTSHPILQPKAPELVPQLQPQTALPYQQKP 297
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 453 RG*RRKEHVSKRPAKGQE---P*KGRVAGVFXXXXXXXRASQKSTLKSEVAKPDRTIKIP 623
RG R ++ S P + P G+ +F +S T A P+ ++IP
Sbjct: 114 RGGREEDSRSSSPMEAPPVGGPLYGKRLSLFQPRKPSTTSSSGGTAIDTTAIPENVLEIP 173
Query: 624 GVSPLXXSPRAALPVSDPXPLTGIPVRLSP 713
S P+A V P T +P + P
Sbjct: 174 NTSHPILQPKAPELVPQLQPQTALPYQQKP 203
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 453 RG*RRKEHVSKRPAKGQE---P*KGRVAGVFXXXXXXXRASQKSTLKSEVAKPDRTIKIP 623
RG R ++ S P + P G+ +F +S T A P+ ++IP
Sbjct: 208 RGGREEDSRSSSPMEAPPVGGPLYGKRLSLFQPRKPSTTSSSGGTAIDTTAIPENVLEIP 267
Query: 624 GVSPLXXSPRAALPVSDPXPLTGIPVRLSP 713
S P+A V P T +P + P
Sbjct: 268 NTSHPILQPKAPELVPQLQPQTALPYQQKP 297
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 582 KSEVAKPDRTIKIPGVSPLXXSPRAALPVSDPXPLTGIPVRLSPLREXVAPSH 740
K E KP K+ P SP+ A+P +P + P LSP + P++
Sbjct: 919 KKEPEKPKDAPKV-AAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAIPIPAN 970
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 588 EVAKPD-RTIKIPGVSPLXXSPRAALPVSDPXPLTGIPVRLSP 713
E+ +P+ T K+P + S + PVSDP P +PV+ P
Sbjct: 225 EIKEPEPATRKVPALKKKEPST-SVKPVSDPSPTKKVPVKKEP 266
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 453 RG*RRKEHVSKRPAKGQE---P*KGRVAGVFXXXXXXXRASQKSTLKSEVAKPDRTIKIP 623
RG R ++ S P + P G+ +F +S T A P+ ++IP
Sbjct: 114 RGGREEDSRSSSPMEAPPVGGPLYGKRLSLFQPRKPSTTSSSGGTAIDTTAIPENVLEIP 173
Query: 624 GVSPLXXSPRAALPVSDPXPLTGIPVRLSP 713
S P+A V P T +P + P
Sbjct: 174 NTSHPILQPKAPELVPQLQPQTALPYQQKP 203
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 455 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 625
GI +E++ E SKR P +FS+ S +PL S+ ++ Q ++ ++ T
Sbjct: 22 GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79
Query: 626 RFPPGXLP 649
PG P
Sbjct: 80 AGVPGAFP 87
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 455 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 625
GI +E++ E SKR P +FS+ S +PL S+ ++ Q ++ ++ T
Sbjct: 22 GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79
Query: 626 RFPPGXLP 649
PG P
Sbjct: 80 AGVPGEFP 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,411
Number of Sequences: 27780
Number of extensions: 322515
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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