Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_L16
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0149 - 22733703-22736216 32 0.71
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 31 0.94
04_01_0180 + 2034021-2034023,2034741-2035088 31 1.6
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 1.6
02_04_0143 + 20172128-20172355,20172452-20173174 29 3.8
03_06_0040 + 31240164-31241102,31241280-31241897 29 6.6
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 29 6.6
07_03_0147 - 14437982-14438390,14438521-14438576 28 8.8
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 28 8.8
>05_05_0149 - 22733703-22736216
Length = 837
Score = 31.9 bits (69), Expect = 0.71
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 432 AEELRKAHPDVEKNATALREKLQAAVQNTVQE--SQKLAKKVSSNVQGD**ETGAQDQGR 605
AE + K H +N+ + +++ Q E SQ K+ S ++ G E QD+G
Sbjct: 409 AEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSDSIDGSKNEVEKQDKGS 468
Query: 606 LRRLREEHP---GGDQED 650
L ++HP G D ED
Sbjct: 469 EGPLVQQHPDTNGSDGED 486
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.5 bits (68), Expect = 0.94
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 398 SLPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 273
+L WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 107 TLRWPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 393 EALEQSRQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 515
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 30.7 bits (66), Expect = 1.6
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Frame = +3
Query: 147 HRSGPRSDGATRRSRLLQGHRTPHQGVP*DFRTTV*LAHQVKGRTGLQQGLEGRLRVRAA 326
H S S + R+ L+ Q + F V L + + + L G+L+
Sbjct: 475 HLSSKISSHQSERAVLVAQIEAISQTMAELFEKNVFLENSLSDANAELESLRGKLKELEE 534
Query: 327 TAQRLRQESPGXRSETRT-ARPREALEQSRQNIERTAEELRKAHPDV-EKNATALRE--K 494
+++ L ++ + E T A + + + QN+E EL K H D+ E+ + L E K
Sbjct: 535 SSEALYSQNSALQHEKSTLACQVDRISDTLQNLEAHYAELEKRHSDLQEEKGSVLDEVIK 594
Query: 495 LQAAVQNTVQESQKL 539
LQ ++ +E L
Sbjct: 595 LQEQIRFERKEHNDL 609
>02_04_0143 + 20172128-20172355,20172452-20173174
Length = 316
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 345 QESPGXRSETRTARPREALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ 524
QE+ G +E A P A E + AEE ++ PD + A A
Sbjct: 235 QETTGEEAEAAAAEPEAAQEGGGGGAQEVAEEEKRVDPDSVQVAAAASSTPSPPSSADDD 294
Query: 525 ESQKLAKKVSSNV 563
E +K ++ +++V
Sbjct: 295 EEEKSKEEAAADV 307
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = +1
Query: 151 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA--WKD--GSE- 315
A+AQ RR+APD D+ +E L+ + N L + + D+ A W D G +
Sbjct: 190 AIAQSKTTRREAPDADTDMSMEAQELRHVLD-ELNPLIGAANLWDYLPALRWFDVFGVKR 248
Query: 316 ---SVLQQLNAFAKSLQGSARRR 375
+ + + NAF + L + R+R
Sbjct: 249 KIVAAVNRRNAFMRRLIDAERQR 271
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 390 REALEQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESQ 533
++ +QS ERT E + KAH ++ K E +QAA +QE Q
Sbjct: 416 KQDAKQSDPKKERTVSEAKEKAHDEMNKGRAYGNETVQAASVKQMQEEQ 464
>07_03_0147 - 14437982-14438390,14438521-14438576
Length = 154
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 440 LLGRA--LDVLPRLFQSLPWPCRSRLRALPWR 351
LL RA L LP Q +PWP SRL + W+
Sbjct: 119 LLPRASVLAALPTTTQWIPWPAASRLGSRAWQ 150
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 339 LRQESPGXRSETRTARPREALEQSR-QNIERTAEELRKAHPDVEKNATALREKLQAAVQN 515
L + R R R LE R Q ++RT+E+L + + ++ LRE + A Q
Sbjct: 632 LDMKKEAEEKHARALRIRSQLESERVQRLQRTSEKLNRVNEWQAVRSSKLREVMNARHQR 691
Query: 516 TVQESQKLAKKVSSNVQGD 572
+ + +V+ GD
Sbjct: 692 SESRHEAYLAQVAKRA-GD 709
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,858
Number of Sequences: 37544
Number of extensions: 271510
Number of successful extensions: 1294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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