Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L14
         (1298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   7.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 832  PXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPP 939
            P  P  +P    +S  P    A  PP PP  +P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/63 (30%), Positives = 23/63 (36%)
 Frame = +1

Query: 1078 PLPXPXLSALXHXHXTPPAXHPRXAXXGAXPPXPXPXXXXCASXACPXLXLLSQARXXPX 1257
            P P P  SA       PP    R     + PP P P     ++ A P L   S+    P 
Sbjct: 361  PPPPPPRSAPSTGRQPPPLSSSRAV---SNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417

Query: 1258 PDP 1266
            P P
Sbjct: 418  PTP 420


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPP 939
           P P  P L P     SQLP P           ++P PP
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,307
Number of Sequences: 5004
Number of extensions: 15097
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)