Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_L14
(1298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0154 + 14509979-14512033 31 1.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 2.0
04_03_0904 + 20717005-20718087 31 2.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 3.5
04_03_1022 - 21778315-21779007 30 4.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 4.6
>07_03_0154 + 14509979-14512033
Length = 684
Score = 31.5 bits (68), Expect = 1.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 841 PXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPP 939
P P R LP P A PP PP P PP
Sbjct: 34 PKSEPASPERGPLPLPAAAPPPPPPPPPPPPPP 66
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 2.0
Identities = 34/151 (22%), Positives = 39/151 (25%), Gaps = 4/151 (2%)
Frame = +1
Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHL----PXPPXXDHXRXXXXXXXXXXXX 993
P P P S + S P P PP P + P PP
Sbjct: 547 PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPP 606
Query: 994 XXTVXTXPRAXPGPRXPXHXXXAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXPP 1173
R+ P P P H+ P P P PP P PP
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPP 666
Query: 1174 XPXPXXXXCASXACPXLXLLSQARXXPXPDP 1266
P P +S P S P P P
Sbjct: 667 PPPPPPR--SSSRTPTGAATSSKGPPPPPPP 695
Score = 29.5 bits (63), Expect = 6.1
Identities = 36/157 (22%), Positives = 44/157 (28%)
Frame = +1
Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPPXXDHXRXXXXXXXXXXXXXXTV 1005
P P P P R+ + PP PP P PP V
Sbjct: 663 PAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPP-PLPPAN-------------RTNGPGV 708
Query: 1006 XTXPRAXPGPRXPXHXXXAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXPPXPXP 1185
+ P P P A PLP P +A + P P A P P P
Sbjct: 709 PSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPP 768
Query: 1186 XXXXCASXACPXLXLLSQARXXPXPDPAXRSXHXXAP 1296
P L A P P P+ + + AP
Sbjct: 769 PQAPKPPGTVPPPPPLHGASGRPHP-PSSKGLNAPAP 804
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.1 bits (67), Expect = 2.0
Identities = 28/120 (23%), Positives = 33/120 (27%), Gaps = 1/120 (0%)
Frame = +1
Query: 829 TPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPPXXDHXRXXXXXXXXXXXXXXTVX 1008
TP P +P + P P P PP H P PP T
Sbjct: 74 TPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPP------TYTPTPTPPKPTPPTYK 127
Query: 1009 TXPRAXPGPRXPXHXXXAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXP-PXPXP 1185
P+ P P P + P P P + TP P P P P P
Sbjct: 128 PQPKPTPAPYTPTPTPPTYKPQ-PKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTP 186
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 826 PTPXXPXLSPXRXXRSQLPRPXXA-XXPPXPPXHLPXPP 939
P P P +SP +P P PP PP + P PP
Sbjct: 377 PPPPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPP 415
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.9 bits (64), Expect = 4.6
Identities = 28/120 (23%), Positives = 31/120 (25%)
Frame = +1
Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPPXXDHXRXXXXXXXXXXXXXXTV 1005
P P P LP P PP PP ++P P
Sbjct: 18 PPPPATRARPPCSSAHLLPPPPP---PPPPPPYVP-PHLLPPSPAPQQWYDHPPNYHPPH 73
Query: 1006 XTXPRAXPGPRXPXHXXXAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXPPXPXP 1185
P PGP P H H P P P + H P P P P P
Sbjct: 74 TPAPAPAPGPYIPPHHPHHHHPPTPAPAPSTTPGGHGGVPPYYPPPPVTPTPYYYPSPAP 133
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 4.6
Identities = 27/104 (25%), Positives = 29/104 (27%)
Frame = +1
Query: 874 QLPRPXXAXXPPXPPXHLPXPPXXDHXRXXXXXXXXXXXXXXTVXTXPRAXPGPRXPXHX 1053
Q+P P PP P PP H A P P P H
Sbjct: 271 QVPAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPP--PAH- 327
Query: 1054 XXAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXPPXPXP 1185
A A P P P + PP P A PP P P
Sbjct: 328 PAAPAPPPPAPSPSAAGAGSG---PPPPPPPAAPAAPRPPGPGP 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,830
Number of Sequences: 37544
Number of extensions: 223500
Number of successful extensions: 1445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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