Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L14
         (1298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    26   0.73 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    32   1.0  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   5.4  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    29   7.2  
Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical pr...    29   9.5  

>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
            protein Y48G9A.4 protein.
          Length = 1115

 Score = 25.8 bits (54), Expect(2) = 0.73
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1060 AHAXXIPLPXPXLSALX-HXHXTPPAXHPRXAXXGAXPPXPXP 1185
            A+   +P+P P    L  +    PP   P     G  PP P P
Sbjct: 553  ANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595



 Score = 25.0 bits (52), Expect(2) = 0.73
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXPP 939
           PTP  P   P +  R    +      PP P   +P PP
Sbjct: 509 PTPPPPAPGPHKEQRRSTSKDPPRPAPP-PVSSIPPPP 545


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = -1

Query: 950 WSXXGGXGRWXG-GXGGWXAXXGRGS*DRXXRXGEXXGXXGVG 825
           W   GG G W   G GGW    GRG  D     G      G G
Sbjct: 40  WGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNG 82


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical protein
            C34D4.11 protein.
          Length = 136

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = -1

Query: 1079 GIXXAWAXXXWXGXRGPGXARGXVXTVXXXXXXXXXXXXXXRXWSXXGGXGRWXGGXGGW 900
            G    W    W G  GPG  RG   +                 W   GG G W G  GG 
Sbjct: 38   GRSGGWGRPGWGGG-GPGWGRGGGGS--------GWGGGRGGGWGNNGGGGNWGGNGGGG 88

Query: 899  XAXXGRG 879
                GRG
Sbjct: 89   NGGGGRG 95



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
 Frame = -1

Query: 1295 GAXWWXERXAGSGWGXXR--AWEXRXRXG-XAXDAQXXXXGXGXGGXAPXXAXRGWXAGG 1125
            G   W     GSGWG  R   W      G    +      G G GG       RG   GG
Sbjct: 51   GGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGG 110


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
            protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 27/114 (23%), Positives = 30/114 (26%), Gaps = 1/114 (0%)
 Frame = +1

Query: 880  PRPXXAXXPPXPPXHLP-XPPXXDHXRXXXXXXXXXXXXXXTVXTXPRAXPGPRXPXHXX 1056
            P P  A  PP PP + P  PP                     V   P A P P    +  
Sbjct: 32   PMPVCAT-PPCPPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAPAPAYNPY 90

Query: 1057 XAHAXXIPLPXPXLSALXHXHXTPPAXHPRXAXXGAXPPXPXPXXXXCASXACP 1218
                   PLP             P       A     PP P      CA+  CP
Sbjct: 91   PCATPPCPLPYIPEPVAPVPAPAPVYEPYACAAPPCPPPTPVYEPYACAAPPCP 144


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 826 PTPXXPXLSPXRXXRSQLPRPXXAXXPPXPPXHLPXP 936
           PTP  P   P     +  P P     PP PP   P P
Sbjct: 546 PTPPPPPREPTPREPTPEPEPVREPTPPPPPPAKPRP 582


>Z72509-3|CAA96647.1|  129|Caenorhabditis elegans Hypothetical
           protein F32G8.3 protein.
          Length = 129

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = -1

Query: 956 RXWSXXGGX-GRWXGGXGGW 900
           R W   GG  G W GG GGW
Sbjct: 27  RQWGGWGGGPGGWGGGPGGW 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,627,941
Number of Sequences: 27780
Number of extensions: 131817
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)