Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L12
         (1266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.15 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.8  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    28   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.2  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   9.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +1

Query: 772 AXRXSXPXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXP 915
           A R S P  P P    P++  P   PP  PP      P  P  PP+ P
Sbjct: 409 ASRTSTPPVPTPPSLPPSA--PPSLPPSAPPSLPMGAPAAPPLPPSAP 454



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 784 SXPXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXP 915
           S P  P   +    ST P   PP  PP      P  P+ PP+ P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP--PSAPPSLP 440



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 19/68 (27%), Positives = 22/68 (32%)
 Frame = +3

Query: 987  SAXXPTSPQXPPXTHRXPXXSPXAXTPPXXRXXPXSXXPXTXLXGPRAXRPPXPPXXXTH 1166
            SA  PTS   PP     P   P    P      P    P +   G  +  P  PP     
Sbjct: 220  SAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPS--NGTVSSPPNSPPRPIAP 277

Query: 1167 HXXHPARN 1190
               +PA N
Sbjct: 278  VSMNPAIN 285



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 784 SXPXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXPXP 921
           S P       P P S       P   P      P  PAPPPA P P
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA-PAP 482


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = +2

Query: 752  PSHYXRRPPDXXPPTXLXPSTRGQTPPXXLXPPPRXXXXPPXSXXXXPXPPPXGPXP 922
            P+H    PP   P +   P     TP     PPP     PP S    P  PP  P P
Sbjct: 1683 PAHPVSTPP-VRPQSAAPPQMSAPTP-----PPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +2

Query: 770  RPPDXXPPTXLXPSTRGQTPPXXLXPPPRXXXXPPXSXXXXPXPPPXGPXP 922
            RP    PP    P+     PP  + PPP     P       P P P    P
Sbjct: 1693 RPQSAAPPQMSAPTP--PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = +2

Query: 770 RPPDXXPPTX-LXPSTRGQTPPXXLXPPPRXXXXPPXSXXXXP-XPPPXGP 916
           RPP   PP   + P +    PP     PP     PP +    P   PP  P
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +1

Query: 790 PXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPP 906
           P  P  L P      P + PP  P   +   P  P  PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +1

Query: 760  LXKKAXRXSXPXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXPXP 921
            L  KA     P    P  P P++  P   P   PP         P+ PP  P P
Sbjct: 1017 LSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP-VPKSSSGAPSAPPPVPAP 1069



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 790  PXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXPXP 921
            P  P P    P        PP  PP T    P   A  P  P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/50 (26%), Positives = 17/50 (34%)
 Frame = +2

Query: 773  PPDXXPPTXLXPSTRGQTPPXXLXPPPRXXXXPPXSXXXXPXPPPXGPXP 922
            PP   P + + P  +       + PP      P  S    P PPP    P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = +1

Query: 790  PXXPXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXPXP 921
            P    P  P P+   P   P   PP         P P P+   P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
 Frame = +1

Query: 790 PXXPXPLHPX-PNSTXPXQXPPXXPPXTTXXXPXGPAP--PPAXPXP 921
           P  P P  P  PN   P +  P  PP      P  P P  PP    P
Sbjct: 99  PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEP 145


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 799 PXPLHPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPP 906
           P P+ P P        PP  PP      P  P PPP
Sbjct: 748 PIPV-PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 790 PXXPXPLHPXPNSTXPXQXPPXXPP 864
           P  P P  P P    P Q PP  PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 811 HPXPNSTXPXQXPPXXPPXTTXXXPXGPAPPPAXP 915
           +P P  +   + PP  PP           PPPA P
Sbjct: 96  NPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPAYP 130


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 734 ATSVXHPSHYXRRPPDXXPPTXLXPST---RGQTPPXXLXPPP 853
           A +V  P+     PP   PP+   P+T       PP    PPP
Sbjct: 155 APTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = -2

Query: 920 GXGXAGGGAGPXGXXXVVXGGSXGGX*XGXVEFGXGWRGXG 798
           G G  GGG G         GG  GG   G   FG G  G G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
 Frame = +2

Query: 752  PSHYXRRPPDXXPPTXLXPSTRGQTPPXXLXPPPRXXXXPPXS--XXXXPXPPP 907
            P    +R     PPT   PS    +P      PP     PP S      P PPP
Sbjct: 1023 PPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPP 1076


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,267
Number of Sequences: 5004
Number of extensions: 16888
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)