Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 769 TSXCXSXPXXPGPXXPQPPXXPPXXXPLXPXXXPP 873
           +S   + P  P P  PQ    PP   P  P   PP
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPP 152



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 754 PVXXPTSXCXSXPXXPGPXXPQPPXXPPXXXPLXPXXXPP 873
           P   P S   S P  P    P P   PP   P  P   PP
Sbjct: 147 PSIPPPSPA-SAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 805 PXXPQPPXXPPXXXPLXPXXXPP 873
           P  P PP  PP   P  P   PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/61 (26%), Positives = 17/61 (27%)
 Frame = +1

Query: 718  PSGSVAPFSXXTPVXXPTSXCXSXPXXPGPXXPQPPXXPPXXXPLXPXXXPPXXXXPXXX 897
            PS  + P         P       P  P P    PP  PP   P  P   P     P   
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP--PVPTPSAGLPPVPV 1231

Query: 898  P 900
            P
Sbjct: 1232 P 1232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +1

Query: 751 TPVXXPTSXCXSXPXXPGPXXPQPPXXPPXXXPLXPXXXPP 873
           TP   P       P   GP  P PP       P  P   PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,015
Number of Sequences: 5004
Number of extensions: 40150
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)