Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_L05
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   2.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   3.6  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 509 CHWSCQXMATI*KMMITEFNILKSSRKRLRVKALESRXLLSV 634
           CH   + M +  ++M+     LKS R  LR KA+ +  L S+
Sbjct: 797 CHQPPKVMESTLEIMVASVTNLKSGRDILRYKAVTANTLFSI 838


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 484 VKDFDCSVNSITMSPTICKSAFVFSSTVFALV 389
           VKDF C  N+I+M   + K+   F S+VF+L+
Sbjct: 563 VKDFVCGANTISMQWNLQKN-MEFISSVFSLI 593


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 580 QPETFTCESIGEPXITLSSXLSXALEK 660
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,629
Number of Sequences: 5004
Number of extensions: 47055
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)