Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_L01
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.014
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.096
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.29
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 644 PXXPPXXXXXPXPPXPPXXXPPPXXXXXXXXPPPXXXPPXXXXXXXXPPXPXXXP 808
P PP P P P PPP PPP PP PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.39
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 591 PPPXXXXXXXPXXXPXPXXPXXXXPXXXXXPXXXPXXXPPPXXXXXPXXPPPPXPP 758
PPP P P P P P P PP PPPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 742 PXXXPPXXXXXXXXPXXPPXXPXXXXXXXXPXPPPXXXXPXXXPXXPPP 888
P PP P P P P PPP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.096
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 681 PXXXPXXXPPPXXXXXPXXPPPPXPP 758
P P PPP P PPPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 656 PXXXXXPXPPXPPXXXPPPXXXXXXXXPPPXXXPP 760
P P PP PP PPP PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 29.1 bits (62), Expect = 0.90
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +2
Query: 653 PPXXXXXPXPPXPPXXXPPPXXXXXXXXPPPXXXPPXXXXXXXXPPXP 796
PP PP P PPP PP PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 653 PPXXXXXPXPPXPPXXXPPPXXXXXXXXPPPXXXPPXXXXXXXXPPXP 796
PP PP PPP PPP PP PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSV---PPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 680 PPXPPXXXPPPXXXXXXXXPPPXXXPPXXXXXXXXPPXPXXXP 808
PP P PP PPP PP PP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPP----PPSAPPMPAGPP 1728
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/69 (24%), Positives = 17/69 (24%)
Frame = +2
Query: 590 PXPXXXXXXXPXXXXXXXPXXPPXXXXXPXPPXPPXXXPPPXXXXXXXXPPPXXXPPXXX 769
P P P P P P PP P PPP PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 770 XXXXXPPXP 796
PP P
Sbjct: 1222 PSAGLPPVP 1230
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/83 (21%), Positives = 18/83 (21%)
Frame = +3
Query: 507 PPXPXXXXXXXXPXXXXXXXPPXXXXXXPPPXXXXXXXPXXXPXPXXPXXXXPXXXXXPX 686
PP P P P PP P P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 687 XXPXXXPPPXXXXXPXXPPPPXP 755
P PP PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/70 (24%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Frame = +2
Query: 590 PXPXXXXXXXPXXXXXXXPXXPPXXXXXPXPPXPPXXXP-PPXXXXXXXXPPPXXXPPXX 766
P P P P P P P P P P P P PP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 767 XXXXXXPPXP 796
PP P
Sbjct: 1163 KPSVAAPPVP 1172
Score = 25.8 bits (54), Expect = 8.4
Identities = 20/84 (23%), Positives = 20/84 (23%), Gaps = 1/84 (1%)
Frame = +3
Query: 507 PPXPXXXXXXXXPXXXXXXXP-PXXXXXXPPPXXXXXXXPXXXPXPXXPXXXXPXXXXXP 683
PP P P P P PP P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 684 XXXPXXXPPPXXXXXPXXPPPPXP 755
P PP PP P P
Sbjct: 1210 VPPP-STAPPVPTPSAGLPPVPVP 1232
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 155 VXAFVKRDAPKEXXSLNTLAESAXKTIEELREKVESALAPETVKKNFGT 301
V A +K+D +E S L TIE+L+ K E+ P K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/80 (25%), Positives = 20/80 (25%)
Frame = +3
Query: 567 PPXXXXXXPPPXXXXXXXPXXXPXPXXPXXXXPXXXXXPXXXPXXXPPPXXXXXPXXPPP 746
PP PP P P P P P P PPP P PP
Sbjct: 130 PPTPQSELRPPTSAP---PRPSIPPPSPASAPPIPSKAPPI-PSSLPPPAQPAAPVKSPP 185
Query: 747 PXPPXXXXXXXXPXXXPXXP 806
P P P P
Sbjct: 186 SAPSLPSAVPPMPPKVPPPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/42 (28%), Positives = 12/42 (28%)
Frame = +3
Query: 681 PXXXPXXXPPPXXXXXPXXPPPPXPPXXXXXXXXPXXXPXXP 806
P P PP PPP PP P P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,474
Number of Sequences: 5004
Number of extensions: 32278
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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