Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K24
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    40   5e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    29   1.7  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    29   1.7  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    27   4.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   7.0  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    27   7.0  

>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +2

Query: 275 MXTIKCVVVGDGAVGKTC 328
           M TIKCVVVGDGAVGKTC
Sbjct: 1   MPTIKCVVVGDGAVGKTC 18


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 287 KCVVVGDGAVGKTC 328
           K V+VGDGA GKTC
Sbjct: 8   KLVIVGDGACGKTC 21


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 287 KCVVVGDGAVGKTC 328
           K V+VGDGA GKTC
Sbjct: 8   KLVIVGDGACGKTC 21


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 287 KCVVVGDGAVGKTC 328
           K VVVGDG  GKTC
Sbjct: 16  KLVVVGDGGCGKTC 29


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 290  CVVVGDGAVGKTC 328
            C++VGD A GKTC
Sbjct: 1872 CILVGDTATGKTC 1884


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 272 KMXTIKCVVVGDGAVGKTC 328
           K   +K V++GD  VGKTC
Sbjct: 5   KRVFLKVVILGDSGVGKTC 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,248
Number of Sequences: 5004
Number of extensions: 17807
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)