Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K21
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.85 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.85 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    28   2.0  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   2.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   2.6  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    27   2.6  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   3.4  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 536 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 378
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 548 PRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLP 375
           P S P R S    S +S  P+ S    +P +  P      P V +P  +   PS   P+P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSAPSLPSAVPPMP 198

Query: 374 PTRNEGPMSQ 345
           P     P+SQ
Sbjct: 199 PKVPPPPLSQ 208


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -3

Query: 587 CRCATTR*SPXXWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 432
           CR ATT   P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 431 *VCAPTCSQPEPSY 390
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 489 LVRVEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQERGSDVPVLPRP 331
           L+  +  D  D DGP+V+PV  RA   PA      ++TS  +   ++P +P P
Sbjct: 36  LIEEDDEDTEDDDGPQVLPVH-RAP-SPAAFRKRGSITSMDQYLVNMPAVPSP 86


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = -3

Query: 533 QRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGP 354
           Q  S ++ + + P+   +++LP N       +Y  + APT    +  Y   +    N  P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYN--VANKLNNNP 243

Query: 353 MSQYCQGLHVVG 318
           +S +    +V+G
Sbjct: 244 LSHWIVSCNVIG 255


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 379 YLPPGTRVRCPSIAKASMWLVWIFRTSSSQPASVLQKG 266
           Y+PPGT +R  S  ++   L W+     ++P   L+KG
Sbjct: 116 YVPPGTVIREISAVRSEQSLEWVQMPGKTKPPK-LKKG 152


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 367 GTRVRCPSIAKASMWLVWIFRTSSSQPA-SVLQKGVTVCWTMTRL 236
           GTRV   SI  AS + VW F    S+ A   LQ  + +C   T L
Sbjct: 421 GTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQTNLILCLLQTVL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,022
Number of Sequences: 5004
Number of extensions: 48042
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)