Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K20
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    31   0.22 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   6.2  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 433 SHIRCLHKDARPC----STELIQPFS*ALLSQYFLKTSSSAPFGLASSISVFRTFKSTSX 266
           S + CLHKD   C    S   ++ F  + L+  +L TSS      A +IS+F    S+S 
Sbjct: 223 SFVLCLHKDELLCLDIQSNSTLKIFEGSALACCWL-TSSKIAVATADAISIFEFPVSSSG 281

Query: 265 LEAVSKGT 242
           L++V + T
Sbjct: 282 LQSVGEPT 289


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 591 CFKXKKHVLRXSVFCWKHSGPPSAMNKAIRSPSLVAHK 478
           C +    ++R S++   HS  PS++++ +  P L  HK
Sbjct: 326 CTENPHLLVRHSIYVSIHSREPSSLSRKLAPPFLRTHK 363


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 639 FQTRLKLLADSTVGKLCFKXKKHVLRXSVFCWKHSGPPSAMNKAIRSP 496
           F +RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 287 FNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,239
Number of Sequences: 5004
Number of extensions: 49354
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)