Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K20
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    29   4.9  
04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911           29   6.5  
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102...    28   8.6  

>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 479 LCATRDGDRIALFIAEGGPECFQQKTXNL 565
           +CA+  G R+AL+  E GPE  +++  +L
Sbjct: 288 ICASIIGQRLALYALEAGPEWIRERVRDL 316


>04_01_0216 - 2739742-2740381,2742346-2742883,2745014-2745911
          Length = 691

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 448 HH*CGSHIRCLHKDARPCSTELIQPFS 368
           HH C  HI  LH+D +PC+  L + F+
Sbjct: 494 HHECDPHI--LHRDIKPCNVLLDENFN 518


>11_01_0126 +
           1021224-1021256,1021717-1022486,1022582-1022667,
           1024240-1024316,1025095-1025190,1025861-1026566,
           1026732-1026775
          Length = 603

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 322 PFGLASSISVFRTFKSTSXLEAVSKGTQCCFNXQGLCLQHCSWCIA 185
           P+ +  S+    +      + A+S G    F  +GLC     WCI+
Sbjct: 419 PYNVRCSLIAADSIAKLIIVAAISIGVMLKFRKEGLCAAVTDWCIS 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,020
Number of Sequences: 37544
Number of extensions: 349836
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)