Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K19
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    27   4.7  
SPCC1259.05c |cox9||cytochrome c oxidase subunit VIIa|Schizosacc...    26   6.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   8.1  

>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  NVFYPTPKLI-EEVNKLLEIMFDKNFADESYSAP*AAKRWRQL 195
           +++YP  KLI E  N + + +  + FAD +Y       RW QL
Sbjct: 202 SIYYPYRKLILENRNPVEKFVTIEEFADAAYPQLVGRGRWYQL 244


>SPCC1259.05c |cox9||cytochrome c oxidase subunit
           VIIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 58

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 269 SIRLAQGLGGLCWWWILYH 325
           S+ +  G  G C+WW  YH
Sbjct: 19  SVTMILGTLGACYWWFGYH 37


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 208 FGLFQAVASVLQPTEQNSSRQQSSCQTLFLVIC*LPR 98
           + +FQ +  ++     + S Q  +CQTLF +   +P+
Sbjct: 609 YSMFQVMTKLIADNLVHFSFQSCACQTLFFICSVVPK 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,622
Number of Sequences: 5004
Number of extensions: 41857
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)