Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K19
         (880 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542121-1|CAG46918.1|  105|Homo sapiens NDUFB2 protein.               66   1e-10
AF050639-1|AAD05428.1|  105|Homo sapiens NADH-ubiquinone oxidore...    66   1e-10
BC063026-1|AAH63026.1|   95|Homo sapiens NDUFB2 protein protein.       64   5e-10
AC006344-2|AAD43191.1|   95|Homo sapiens NADH-ubiquinone oxidore...    64   5e-10
Z29505-1|CAA82631.1|  299|Homo sapiens sub2.3 protein.                 31   4.2  
X78137-1|CAA55016.1|  356|Homo sapiens hnRNP-E1 protein.               31   4.2  
U24223-1|AAA91317.1|  356|Homo sapiens alpha-CP1 protein.              31   4.2  
BC039742-1|AAH39742.1|  356|Homo sapiens poly(rC) binding protei...    31   4.2  
AC016700-1|AAX93191.1|  356|Homo sapiens unknown protein.              31   4.2  

>CR542121-1|CAG46918.1|  105|Homo sapiens NDUFB2 protein.
          Length = 105

 Score = 66.5 bits (155), Expect = 1e-10
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = +2

Query: 209 RNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPS 379
           R+AG GV     YR  P + ++  +  ++   GL W+WIL+    + E + G +PY DPS
Sbjct: 32  RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPS 90

Query: 380 TWTDEELGIPPD 415
            WTDEELGIPPD
Sbjct: 91  QWTDEELGIPPD 102


>AF050639-1|AAD05428.1|  105|Homo sapiens NADH-ubiquinone
           oxidoreductase AGGG subunit protein.
          Length = 105

 Score = 66.5 bits (155), Expect = 1e-10
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = +2

Query: 209 RNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPS 379
           R+AG GV     YR  P + ++  +  ++   GL W+WIL+    + E + G +PY DPS
Sbjct: 32  RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPS 90

Query: 380 TWTDEELGIPPD 415
            WTDEELGIPPD
Sbjct: 91  QWTDEELGIPPD 102


>BC063026-1|AAH63026.1|   95|Homo sapiens NDUFB2 protein protein.
          Length = 95

 Score = 64.5 bits (150), Expect = 5e-10
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +2

Query: 251 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 415
           P  ++  +  ++   GL W+WIL+    + E + G +PY DPS WTDEELGIPPD
Sbjct: 38  PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92


>AC006344-2|AAD43191.1|   95|Homo sapiens NADH-ubiquinone
           oxidoreductase AGGG subunit protein.
          Length = 95

 Score = 64.5 bits (150), Expect = 5e-10
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +2

Query: 251 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 415
           P  ++  +  ++   GL W+WIL+    + E + G +PY DPS WTDEELGIPPD
Sbjct: 38  PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92


>Z29505-1|CAA82631.1|  299|Homo sapiens sub2.3 protein.
          Length = 299

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 430
           ++ PE + G W  +D ST T  EL IP +  GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294


>X78137-1|CAA55016.1|  356|Homo sapiens hnRNP-E1 protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 430
           ++ PE + G W  +D ST T  EL IP +  GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294


>U24223-1|AAA91317.1|  356|Homo sapiens alpha-CP1 protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 430
           ++ PE + G W  +D ST T  EL IP +  GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294


>BC039742-1|AAH39742.1|  356|Homo sapiens poly(rC) binding protein 1
           protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 430
           ++ PE + G W  +D ST T  EL IP +  GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294


>AC016700-1|AAX93191.1|  356|Homo sapiens unknown protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 430
           ++ PE + G W  +D ST T  EL IP +  GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,913,741
Number of Sequences: 237096
Number of extensions: 1892641
Number of successful extensions: 4129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4074
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)