Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K17
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    29   0.68 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    28   2.1  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    27   3.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   4.8  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.4  
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.4  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    26   8.4  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   8.4  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 667 WYAP-KVGQWASAGKKVEWKTLILXTILGMPGGVLLF 774
           +Y P K     +AGK+  W+TL+L  + G  G   LF
Sbjct: 526 YYLPNKEANTYNAGKEASWETLLLSVVRGKSGIAFLF 562


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 328 EYDNFWHSQTPIIFLGARLPLHIILLYPAFIYHAAYAVSKLNLPRYAEPFAVGLVTVLID 507
           +Y   +      IFL A   +  I L  +F YH    V+   L  Y +PF + L  VLI 
Sbjct: 109 QYFQIFSKDPRAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIAL-PVLIG 167

Query: 508 I 510
           +
Sbjct: 168 V 168


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 284 FMGFTQITSGISYCQSTIISGIR 352
           F+GF  + +GI+YC +  ++G++
Sbjct: 91  FLGFLVLLAGIAYCGANYVAGLQ 113


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 180  CRLGSPQLLDVIFSDAPIQPRFQLRARRLHXM*PFD 73
            CR+G   L + +F++   QP +Q R    + M  F+
Sbjct: 972  CRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFE 1007


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 265 FWLGTVLHGIYADNFW 312
           FW+  VL G+Y  N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 837 KEECDLXMYXVYVVERVIDRYEEE 766
           ++EC++    +Y VER I RY  E
Sbjct: 32  EKECEMYAVKIYNVERDIQRYRHE 55


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 294 NPMKYGTEPKIRPSSAFFKSMK 229
           N MKYG E + RP+  +F+S K
Sbjct: 679 NIMKYGDEIRSRPARTWFQSEK 700


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 115  ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 252
            E WL +  R +     W++ P++ +S AV V+  L TLF  F   KGG
Sbjct: 891  ENWLIFITRCSG--PFWSSFPSWQLSGAVLVVDILATLFCIFGWFKGG 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,567
Number of Sequences: 5004
Number of extensions: 76523
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)