Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K17
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0295 + 17006064-17007063,17007068-17007666                       29   6.7  
12_02_0277 + 16682836-16684368                                         29   6.7  
12_02_0275 + 16662206-16663738                                         29   6.7  
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284...    29   6.7  
12_02_0291 + 16951154-16952740                                         28   8.8  
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187...    28   8.8  
02_04_0506 - 23538982-23539221                                         28   8.8  
01_06_1256 - 35775149-35775590,35775782-35775840                       28   8.8  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   8.8  

>12_02_0295 + 17006064-17007063,17007068-17007666
          Length = 532

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 106 AELETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 228
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPM 42


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 106 AELETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 240
           A LETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 106 AELETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 240
           A LETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
            35037372-35038586,35038659-35039316,35039331-35041012
          Length = 1541

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 660  QKLVCAESGTVGFCGQKGGMENVNSXNDPGDAGRCTPLRTDLSPAPRHIXXTFXDHI 830
            ++L+ A     G+  +K G + +N+ N P    RC+  R    PA +H+     D +
Sbjct: 1310 KRLLTASPYDDGYQWRKYGQKKINNTNFPRSYYRCSYHRERRCPAQKHVQQRDGDDV 1366


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 106 AELETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 228
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42


>10_08_0941 -
           21717703-21718091,21718454-21718564,21718707-21718791,
           21718885-21719106,21719804-21720292,21722206-21722322
          Length = 470

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 368 SWEPGCPYI*FCC-IPHLY 421
           +W+P CP + FC   PHLY
Sbjct: 388 AWDPNCPRLVFCTESPHLY 406


>02_04_0506 - 23538982-23539221
          Length = 79

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 682 VGQWASAGKKVEWKTLILXTILGMPGGVLLFVP 780
           VG  A AG +V W  L+   ++ + G + LF P
Sbjct: 45  VGASAGAGDRVPWPRLLAELLIWLVGCITLFAP 77


>01_06_1256 - 35775149-35775590,35775782-35775840
          Length = 166

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 490 PSPPRKAPRNVEDSALRLHT 431
           P PP++  +N ED AL LHT
Sbjct: 8   PFPPKRKRQNGEDGALHLHT 27


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 487 LVTVLIDIPYDIVAVKFVHWTWHDTDPNIFDRH 585
           ++  L+D       V   HWTW D D   +D H
Sbjct: 215 MILHLLDNHLSFARVGGTHWTWIDVDEQCWDYH 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,136,193
Number of Sequences: 37544
Number of extensions: 536229
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)