Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K15
         (1250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.012
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.047
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.77 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 31/125 (24%), Positives = 32/125 (25%), Gaps = 2/125 (1%)
 Frame = +2

Query: 455 PPPXXQTPRXGGPXPXTXXPAXGGGRPXPPXXSFFXXXXXXXXHTXLFFPRRXGXXPXPP 634
           PPP    P  G   P           P PP                L    R    P P 
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA---IPGRSAPALPPLGNASRTSTPPVPT 419

Query: 635 PXXLSPXPXPXPPPSSPXXXXXXXRXXXXXXXXP--XXXXPTXXPXPRPXXXXXPXPPPA 808
           P  L P   P  PPS+P                       P   P   P     P PPPA
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479

Query: 809 PXXXP 823
           P   P
Sbjct: 480 PAPAP 484



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
 Frame = +3

Query: 648 PPXXTXLPPPPPPXXXP----XPXXXAXXXXXXPXPXXPXXXPXRGXPA 782
           PP     PPPPPP   P     P   +        P  P   P R  PA
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 22/76 (28%), Positives = 23/76 (30%)
 Frame = +3

Query: 564 PPXPXXPTXPXFFXGGXGGPPXHPLXXSPPXXTXLPPPPPPXXXPXPXXXAXXXXXXPXP 743
           PP P  P+ P         PP  P   S P      PP PP     P   A      P P
Sbjct: 415 PPVPTPPSLPPSAPPSL--PPSAP--PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470

Query: 744 XXPXXXPXRGXPAXXA 791
                 P    PA  A
Sbjct: 471 PAAPAPPPAPAPAPAA 486


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +3

Query: 621  PPXHPLXXSPPXXTXLPPPPPPXXXPXPXXXAXXXXXXPXPXXPXXXPXRGXPA 782
            PP  P   +PP  +   PPPPP   P P   A      P    P   P    P+
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVP-PPPSAPPMPAGPPSAPPPPLPASSAPS 1742



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 602  PRRXGXXPXPPPXXLSPXPXPXPPPSSP 685
            P+     P PPP  + P P   P P+ P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 20/73 (27%), Positives = 22/73 (30%)
 Frame = +2

Query: 623 PXPPPXXLSPXPXPXPPPSSPXXXXXXXRXXXXXXXXPXXXXPTXXPXPRPXXXXXPXPP 802
           P PPP  + P P P P P  P                     P   P P       P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPI-------------MGGPPPPPPPPGVAGAGPPPPP 779

Query: 803 PAPXXXPRGAXRF 841
           P P     G  R+
Sbjct: 780 PPPPAVSAGGSRY 792



 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +3

Query: 567 PXPXXPTXPXFFXGGXGGPPXHPLXXSPPXXTXLPPPPPPXXXP 698
           P P  P  P       GGPP  P    PP      PPPPP   P
Sbjct: 748 PIPVPPPAPIM-----GGPPPPP---PPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 455 PPPXXQTPRXGGPXPXTXXPAXGGGRPXPP 544
           PPP    P  GGP P    P   G  P PP
Sbjct: 752 PPP---APIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 602 PRRXGXXPXPPPXXLSPXPXPXPPPSSP 685
           P   G  P PPP  ++    P PPP  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = -3

Query: 822 GXXXGAGGGXGXXXXXGRGXGXXVGXXXXGXXXXXXXXRXXXXXXXGEEGGGXGXGXGEX 643
           G   G GGG G       G G   G    G                G EGG  G G G  
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG--FGGGPGGFEGGPGGFGGGPG 245

Query: 642 XXGGGXG 622
             GGG G
Sbjct: 246 GFGGGLG 252


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +3

Query: 564  PPXPXXPTXPXFFXGGXGGPPXHPLXXSPPXXTX---LPPPPPPXXXPXP 704
            PP P     P       G PP  P   +PP  T    LPP P P     P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
 Frame = +2

Query: 623  PXPPPXXLSPXPXPX-PPPSSPXXXXXXXRXXXXXXXXPXXXXPTXXPX-PRPXXXXXPX 796
            P P P    P P P    P  P                P    P+  P  P+P     P 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 797  PPPA 808
            PPP+
Sbjct: 1211 PPPS 1214



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = +2

Query: 623  PXPPPXXLSPXPXPX---PPPSSPXXXXXXXRXXXXXXXXPXXXXPTXXPXPRPXXXXXP 793
            P P P    P P P    PP  +P       +        P        P P+P     P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP-PVPKPAAGVPP 1190

Query: 794  XPPPA 808
             PPP+
Sbjct: 1191 VPPPS 1195



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
 Frame = +3

Query: 564  PPXPXXPTX-PXFFXGGXGGPPXHPLXXSPPXX---TXLPPPPPPXXXPXPXXXAXXXXX 731
            PP P   +  P       G PP  P   +PP       +PP PPP   P     +     
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 732  XPXP 743
             P P
Sbjct: 1229 VPVP 1232


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 623 PXPPPXXLSPXPXPXPPP 676
           P PPP    P   P PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,935
Number of Sequences: 5004
Number of extensions: 29043
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)