Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_K08
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.49
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 0.76
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 8.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.49
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 425 PPXXFXWXPPXKXIXXPPPTXXGGXXPPPPHP 520
PP P I PPP G PPPP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 424 PXPPFFXGXPXXXNXXPPXHXXXGXXPPPPPP 519
P P G P PP G PPPPPP
Sbjct: 753 PPAPIMGGPPPPP--PPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 0.76
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 691 PPPPPPP 711
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 4.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 691 PPPPPPP 711
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 0.76
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 694 PPPPPPP 714
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 4.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 697 PPPPPP 714
PPPPPP
Sbjct: 361 PPPPPP 366
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 691 PPPPPPPP 714
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 430 PPFFXGXPXXXNXXPPXHXXXGXXPPPPP 516
PP P PP H G PPPP
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,938
Number of Sequences: 5004
Number of extensions: 22244
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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