Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_K07
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.001
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.003
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 37 0.003
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.014
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.031
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.032
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.072
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.072
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.13
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 31 0.29
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 0.55
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.67
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 2.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 4.7
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 27 4.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Frame = +2
Query: 785 PXPXPXXPXXXPXPXXXXPPPXPPXP------PPXPPPPXP 889
P P P P P P PPP PP P PP PPPP P
Sbjct: 744 PAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.7 bits (71), Expect = 0.072
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 776 PXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPP 883
P P P P P P PP PP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +3
Query: 708 ILPSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXXPPXXPPXXPPP 878
+L S P PP P P P P P P P P PP PPP
Sbjct: 728 LLKSPPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPX-----PPXPPPXPP 877
P P P P P P PPP PP PPP PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 785 PXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P PP P PPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXP 874
P P+ + P P P P P P P PP PPP P
Sbjct: 735 PPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/39 (48%), Positives = 19/39 (48%)
Frame = -1
Query: 882 GGGGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXGXXG 766
G GG GGG GG GGG G G G G G G G G
Sbjct: 236 GPGGFGGGPGGFGGG--LGGFGGGPGGFGGGPGGHGGPG 272
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -1
Query: 888 GXGGGGXGGGXGGXGGGXXXXGXGXXXGXXGXG 790
G G GG GGG GG GGG G G G G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFG-GGPGGHGGPG 272
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 876 GGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXGXXGVXXXGXXXXXEGXG 724
G GGG GG GGG G G G G G G G G G G
Sbjct: 184 GHNGGGFGGFGGG--SGGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGGPG 231
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPX-PXXPXXXPXPXXXXPPPXPPXPPPXPPPP 883
P P+ P P P P P P P P PP PP PPPP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 776 PXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P P PP P PPP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Frame = +2
Query: 767 PXXPXXPXP-XPXXPXXXPXPXXXXPPPXPPXPPPXP--PPPXP 889
P P P P P P PPP P PP P PP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 776 PXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P PPP P P PP P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXP---PPP 883
P TP P P P PP P PP P PPP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 839 PPPXPPXPPPXPPPPXP 889
PPP PP P P P P
Sbjct: 5 PPPPPPAPAPAAAAPAP 21
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P P P PP P PP PPPP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSA---PPMPAGPPSAPPPPLP 1736
Score = 29.9 bits (64), Expect = 0.51
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPP-PXP 889
P P P P P P P P P PP P P P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Frame = +2
Query: 767 PXXPXXPXPXPXXPXXXPXPXXXXPPPXP-PXPPPXPPPPXP 889
P P P P PPP P PPP PP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP-PXPPXPPPXPPP 880
P P P P P P P P P PP P P PP P P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP-PXPPXPPPXPPP 880
P P+ P P P P P P P PP P P PP P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 33.1 bits (72), Expect = 0.055
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P P P P P P P P PPP P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXP---XXPXXXPXPXXXXPPP---XPPXPPPXPPPPX 886
P P P P P P P P P P P PP PPP PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 887 P 889
P
Sbjct: 1220 P 1220
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP-PXPPXPPPXPPP 880
P P P P P P P PP P P PP P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXX-PXXPXPXPXXPXXXPXPXXXXPPPX------PPXPPPXPPPP 883
P P P P P P P P P P PP PP PPP PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 884 XP 889
P
Sbjct: 1200 VP 1201
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/70 (25%), Positives = 21/70 (30%)
Frame = +3
Query: 681 PLXLTVNXXILPSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXXPPXXP 860
P+ T +P+ P P S P P P P P P P P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA--PSGAPPVPAPSGIP 1092
Query: 861 PXXPPPXXXP 890
P P P
Sbjct: 1093 PVPKPSVAAP 1102
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP------PXPPXPPPXPPPPX 886
P P+ P P P P P P P PP PP P P PP
Sbjct: 1065 PVPAPSSEIPSIPAPSGAP-PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123
Query: 887 P 889
P
Sbjct: 1124 P 1124
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +2
Query: 731 PSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP-PXPPXPPPXPPP 880
P+ P P P P P P P PP P P PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPV-PKPSVAVPPVPAPSGAPPVPKP 1126
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/69 (27%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Frame = +3
Query: 711 LPSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXX---------PXXXPXPXXPPXXPP 863
+PS P P S P P PP P P P PP PP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Query: 864 XXPPPXXXP 890
PP P
Sbjct: 1195 SEAPPVPKP 1203
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/63 (28%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXP----XPXPPXPXXXXPXXXPXXXPXPXXPPXXPPXXPPPX 881
PS P P S P P P P P P P P P PPP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 882 XXP 890
P
Sbjct: 1215 TAP 1217
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Frame = +3
Query: 666 HRSTCPLXLTVNXXILPSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXX 845
H + PL V+ PP P P P P P P P P
Sbjct: 990 HPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP-PVPIPTS 1048
Query: 846 PPXXP------PXXPPPXXXP 890
P P P PPP P
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAP 1069
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/61 (26%), Positives = 19/61 (31%)
Frame = +2
Query: 707 NTTXXXPXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPX 886
+T P P+ P + P P P P P P P P PP P
Sbjct: 1038 STAPPVPIPTSTPPVPKSSS-GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 887 P 889
P
Sbjct: 1097 P 1097
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXPXPXPPXP---XXXXPXXXPXXXPXPXXPPXXPPXXPPP 878
PS P P S P P PP P P P P P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +2
Query: 725 PXPSXMXXXPXXXTPXX-PXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P P P P P P PP P PP P P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVP---PVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPP-PXPPXPPPXPPPP 883
P P P P P P P PP P P P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXXPPXXPPXXPPP 878
PS P P S P P PP P P P PP P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVP-TPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect(2) = 0.032
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPP 880
P P P P P P P P PPP PPP
Sbjct: 156 PTVSAPNSMVSPPPS-FQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 806 PXXXPXPXXXXPPPXPPXPPPXPP 877
P P P P PP PP PP
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPP 248
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 824 PXXXXPPPXPPXPPPXPPPP 883
P P P PP PPP PP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/59 (25%), Positives = 15/59 (25%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXXPPXXPPXXPPPXXXP 890
P P PP P P P P P PP PPP P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 25.0 bits (52), Expect(2) = 0.032
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 854 PXPPPXPPPPXP 889
P PPP PPP P
Sbjct: 236 PAPPPPPPPTLP 247
Score = 23.8 bits (49), Expect(2) = 1.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 845 PXPPXPPPXPPPP 883
P PPP PPPP
Sbjct: 184 PSDYNPPPPPPPP 196
Score = 23.0 bits (47), Expect(2) = 1.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 863 PPXPPPPXP 889
PP PPPP P
Sbjct: 189 PPPPPPPPP 197
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 32.7 bits (71), Expect = 0.072
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 752 PXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
P P P P P P P P P P PP P P P
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.072
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 882 GGGGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXGXXG 766
G GG GG GG GGG G G G G G G
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG 55
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -1
Query: 888 GXGGGGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXGXXG 766
G GGG GG GG G G G G G G G G G
Sbjct: 26 GGFGGGRGGARGG-GRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = -1
Query: 888 GXGG--GGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXGXXG 766
G GG GG GG GG GG G G G G G G
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = +2
Query: 824 PXXXXPPPXPPX--PPPXPPPPXP 889
P PPP PP PP PPPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 806 PXXXPXPXXXXPPPXPPXPPPXPPPP 883
P P P P PP PP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.51
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 797 PXXPXXXPXPXXXXPPPXPPXPPP 868
P P P P PP PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 817 PXXXXPXPXXXPXXPPXXPPPXXPP 891
P P P PP PPP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 882 GGGGXGGGXGGXGGGXXXXGXGXXXGXXGXGXGXXG 775
GGGG GGG GG GG G G G G
Sbjct: 135 GGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPG 170
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect(2) = 0.55
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 851 PPXPPPXPPPP 883
P PPP PPPP
Sbjct: 942 PAFPPPPPPPP 952
Score = 22.6 bits (46), Expect(2) = 0.55
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 845 PXPPXPPPXP 874
P PP PPP P
Sbjct: 905 PTPPPPPPLP 914
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +2
Query: 731 PSXMXXXPXXXTPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPP-PXP 889
PS P P P P P P P P P P PPP P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Frame = +2
Query: 764 TPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPP-----PPXP 889
TP P P P P P P P PP PP PP P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXP------XXXPXPXXPPXXPPXXPP 875
PS PP S P P P P P P P PP PP PP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 767 PXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPP 877
P P P P P P PP P P P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 764 TPXXPXXPXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPP 880
TP P P P P P P PPP PPP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERV--PSLSAPAPPPIPPP 259
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/59 (25%), Positives = 15/59 (25%)
Frame = +3
Query: 714 PSXXPXPPXXSXFXXXXPXPXPXPPXPXXXXPXXXPXXXPXPXXPPXXPPXXPPPXXXP 890
PS P P P P P P P P P PP P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Frame = +2
Query: 704 SNTTXXXPXPSXMXXXPXXXTPXXPXXPXPXPXXPXXXPX--PXXXXPPPXPPXPPPXPP 877
++ T P P+ P P P P P P PP P P PP
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Query: 878 PP 883
P
Sbjct: 469 LP 470
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 266 GDMPLEEINPDLAEAFNALP-AGRSAGKDVEAAPEIPEHYSSKLNVPEN 409
G + E+ + F L AG AG +E PEIP+H N N
Sbjct: 1379 GSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWNTTWN 1427
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 440 IFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQR 336
+ +SG+ Q LG M S REF + +HLY +
Sbjct: 117 LLESGFSQPLGLNNR--FMPSTREFAAIFKHLYNK 149
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -1
Query: 888 GXGG--GGXGGGXGGXGGGXXXXGXGXXXGXXGXG 790
G GG GG GG GG GG G G G G
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 888 GXGGGGXGGGX-GGXGGGXXXXGXGXXXGXXGXG 790
G GG GGG GG GGG G G G
Sbjct: 156 GNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 842 PPXPPXPPPXPPPP 883
PP P PPP PP P
Sbjct: 806 PPPAPLPPPAPPLP 819
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 227 PQAPGYVPVYIRSGDMPLEEINP----DLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL 394
PQ + Y+ +GD+PL++ D+ EA + P + V A IP+ + S L
Sbjct: 156 PQLDSMIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSL 215
Query: 395 NVPENPEIGDS 427
E DS
Sbjct: 216 EQELVSETVDS 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,270
Number of Sequences: 5004
Number of extensions: 48755
Number of successful extensions: 569
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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