Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K07
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.70 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 785 PXPXPXXPXXXPXPXXXXPPPXPPXPPPXPPPPXP 889
           P P P        P    PP     PPP  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 16/59 (27%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
 Frame = +2

Query: 710 TTXXXPXPSXMXXXPXXXTPXXPXXPXPXPXXPXXX--PXPXXXXPPPXPPXPPPXPPP 880
           T    P  +     P    P     P   P  P     P P    PP  PP  PP   P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 851 PPXPPPXPPPP 883
           PP P P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 842 PPXPPXPPPXPPPPXP 889
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 839 PPPXPPXPPPXPPPP 883
           P P PP PPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 860  PPPXPPPP 883
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 VTCPFTSGAETCPSKKSILIWLKL 311
           +  PF +G   CP K+ + + L+L
Sbjct: 455 LVAPFGAGRRICPGKRFVDLALQL 478


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +2

Query: 281 EEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLN 397
           +E++  +       PAG    +DV     + ++Y + +N
Sbjct: 72  QEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,422
Number of Sequences: 438
Number of extensions: 6022
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)