Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_K02
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    71   2e-13
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    69   1e-12
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   8.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   8.8  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +3

Query: 168 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSGMSLQDYISVKEKYAKYLPHSAGRXA 347
           A S++ + +SL +      IKLF ++    V+V  +SL DYI++     + LPH+AGR  
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56

Query: 348 HKRFRKAHCPIVERLTNSLMMHG 416
            KRFRKA C IVERLTNSLMM+G
Sbjct: 57  TKRFRKARCFIVERLTNSLMMNG 79



 Score = 33.1 bits (72), Expect = 0.058
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 494 EXPLXVLVTAIINSGPREDSTRI 562
           + PL VLV A+   GPREDSTRI
Sbjct: 105 QNPLQVLVDAVAACGPREDSTRI 127


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
 Frame = +3

Query: 189 TMSLPQAADIPE---IKLFGRWSCYDVQVSGMSLQDYISVKEKYAKYLPHSAGRXAHKRF 359
           T SL     + E   IKLF ++    V+V  +SL DYI++     + LPH+AGR   KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 360 RKAHCPIVERLTNSLMMHG 416
           RKA C IVERLTNSLMM+G
Sbjct: 61  RKARCFIVERLTNSLMMNG 79



 Score = 33.1 bits (72), Expect = 0.058
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 494 EXPLXVLVTAIINSGPREDSTRI 562
           + PL VLV A+   GPREDSTRI
Sbjct: 105 QNPLQVLVDAVAACGPREDSTRI 127


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 767 TPIDNRQXPPRPPSARLXXXPATTHN 844
           TP D    PP PP+A     P T  N
Sbjct: 269 TPTDQTLRPPNPPAANGNATPVTAVN 294


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 366 LYGNACVXTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 205
           L  N C+    LNE ++ + SL R   P++    ++ R +S+ +K+   E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   FNYRSHY*WNSLKXLVPYFLFRVY 79
           FNY++   W +L  ++ Y+ F V+
Sbjct: 780 FNYKTRQLWRNLAIIIGYYAFLVF 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,897
Number of Sequences: 5004
Number of extensions: 42258
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)