Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J18
         (1167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    33   0.39 
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    31   1.6  

>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 732 PXQEPXXXXXXXPXXXPPXNPXQTXPPSLXPHSRPTPHNLPXTTXXAXPAPK 887
           P  EP       P   P  NP     P   P  +P P   P T   + P PK
Sbjct: 215 PKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPKPKTKLKSEPKPK 266



 Score = 28.7 bits (61), Expect = 8.3
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +3

Query: 732 PXQEPXXXXXXXPXXXPPXNPX-QTXP-PSLXPHSRPTPHNLPXTTXXAXPAPK 887
           P  +P       P   P  NP  +  P P   P+SRP P+  P     + P PK
Sbjct: 263 PKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPK 316


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 17/61 (27%), Positives = 20/61 (32%)
 Frame = +3

Query: 732 PXQEPXXXXXXXPXXXPPXNPXQTXPPSLXPHSRPTPHNLPXTTXXAXPAPKXHXXXPXP 911
           P  +P       P   P   P     P L P   P P  +P       P PK H   P P
Sbjct: 172 PFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPK-HKPKPFP 230

Query: 912 Q 914
           +
Sbjct: 231 K 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,811
Number of Sequences: 27780
Number of extensions: 108792
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)