Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J16
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           34   0.13 
03_06_0471 + 34169562-34169892,34170121-34170347                       33   0.40 
02_04_0382 - 22501041-22501279,22501717-22501810                       33   0.40 
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    32   0.70 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.8  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   3.7  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    29   6.5  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 159 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 317
           Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 159 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 308
           Y P    P    PP  Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +3

Query: 102 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDP 266
           F ++   A +A A     +G  P ++  +   PP     D  P+ + Y+P  +  YY DP
Sbjct: 16  FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74

Query: 267 PQGRPYFKPTPFPGARGG 320
           P    Y+ P P P   GG
Sbjct: 75  PPSPDYYDPPPSPYYGGG 92


>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 227  AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRQK 63
            A  I  +++G ++D     ++F+ +S       QS+DEN +  H  +  +YH +K
Sbjct: 985  ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = +3

Query: 177 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 293
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 147 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 302
           QG  Y+P   R     PP+   P    Y P   G  Y   PQG+PY  P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 165 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 305
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 66  LPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 236
           LPV  + +     FMI+  ++L + N    G  P+D+  Y+ + P DY      Y+P
Sbjct: 473 LPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,077
Number of Sequences: 37544
Number of extensions: 343148
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)