Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J14
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    75   8e-14
01_06_1411 + 37127098-37128279                                         31   1.6  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   3.8  
03_01_0515 - 3864796-3865425                                           29   6.6  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   6.6  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 34/62 (54%), Positives = 47/62 (75%)
 Frame = +3

Query: 138 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 317
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 318 NI 323
           ++
Sbjct: 61  SV 62


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = -1

Query: 369 RLALHQRPEQHPLQSRCW*SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQLRQH 193
           RL LH R  Q P+  R     H H  L       L    LHL P L R  +  H+LR+H
Sbjct: 93  RLHLHLRHHQFPVYRRGHHPDHDHDPLLH----PLPRQELHLDPSLRRALRSWHRLRRH 147


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 102 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 224
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 768 PXXPXPXPXPPPXXXXXXXXPXPXXPXXXXXXXPP 872
           P  P P P PPP        P P  P       PP
Sbjct: 84  PPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 768 PXXPXPXPXPPPXXXXXXXXPXPXXPXXXXXXXPP 872
           P  P P P PPP        P P  P       PP
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPP 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,398
Number of Sequences: 37544
Number of extensions: 295851
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)