Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J12
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    89   8e-19
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    42   9e-05
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    30   0.39 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.7  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.6  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 39/98 (39%), Positives = 62/98 (63%)
 Frame = +2

Query: 137 EWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPAN 316
           E+  +TP+P+DDG NP+  I ++  +E    YFRA++   E S R L+LT   +  NPA+
Sbjct: 16  EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAH 75

Query: 317 YTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQV 430
           YTVW YR  +L H  + +  EL++++ + ++  KNYQV
Sbjct: 76  YTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQV 113



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +2

Query: 206 EKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELD 385
           +K   V+ + + +L   +  ER L  TK   E++  NY VW YR  +L++ N D   EL 
Sbjct: 108 QKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFN-DYSQELK 166

Query: 386 YVEAVIKNSPKN 421
               +++    N
Sbjct: 167 LTNELLEKDIYN 178



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +2

Query: 221 VYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLL----KHLNTDLRTELDY 388
           V+ Y   +LQ+     + L LT + LE +  N + W +R  +L    K ++  L  EL+Y
Sbjct: 147 VWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNY 206

Query: 389 VEAVIKNSPKN 421
           ++  I  +P N
Sbjct: 207 LKDKILFAPDN 217


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
 Frame = +2

Query: 197 AHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKH------- 355
           A  E++  +   F+   +  + SE  L LT + L+ NP  Y+VW YRR++L +       
Sbjct: 23  AKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYSVWNYRREILLNDVFPKIS 82

Query: 356 LNTD---LRTELDYVEAVIKNSPKNYQV 430
           LN     L  EL YV + +K  PK Y +
Sbjct: 83  LNEKQDLLDNELKYVLSKMKVFPKVYWI 110



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 266 ERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTEL 382
           E+ L +   A+  +P + +VW Y R L+ H N +  T L
Sbjct: 216 EQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPL 254


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 18/67 (26%), Positives = 37/67 (55%)
 Frame = +2

Query: 227 DYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIK 406
           D+FR+++Q NEK   +   T ++ +LN        Y+R L++     L  EL+ ++++ +
Sbjct: 631 DFFRSLVQENEKLLDMAPATPNS-KLNTNLIEQTSYQRSLIR--LEQLTNELESLKSISR 687

Query: 407 NSPKNYQ 427
           N  K ++
Sbjct: 688 NKEKKFE 694


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 251 SNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHL---NTDLRTELDYVEAVIKNSPKN 421
           S + S+ ++    D L L+P       Y  DLL  L   +   + E+  +E +I   PKN
Sbjct: 676 SAQMSDSIISSLSDVLVLSPLEVLASWYAADLLDALLMESLSRKVEISEIEEIISLCPKN 735

Query: 422 YQV 430
             +
Sbjct: 736 SSI 738


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 59  LILRIHSACLIAGTVMFYWIPYKERPEWSDVTPVPEDDGPNPVVVIAHSEKF 214
           L+LR+     I G  + +    + R EW +  PV   D     V+I+H+ KF
Sbjct: 180 LVLRVAKPANIRGISLSF--TGRSRTEWPEGIPVKGHDTYEDKVIISHNWKF 229


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 170 DGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTK 289
           +G +P  +IAH E+ E++  YF  ++   EK  R+L L K
Sbjct: 205 EGLSPAELIAHKEESEEMGGYF--IVNGIEKLIRMLILPK 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,623
Number of Sequences: 5004
Number of extensions: 58442
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)