Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_J12
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 115 4e-26
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 32 0.64
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 32 0.64
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 31 1.5
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 31 1.5
Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical pr... 29 5.9
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 115 bits (277), Expect = 4e-26
Identities = 52/103 (50%), Positives = 68/103 (66%)
Frame = +2
Query: 122 YKERPEWSDVTPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALE 301
YK+ +W D+TP+ V IA +E F D + YFRA+L NEKS+RV+ L +D +
Sbjct: 12 YKDNVDWKDITPIYPSKEEEVAVKIAVTEDFTDAFAYFRAILIKNEKSDRVMALLEDCIR 71
Query: 302 LNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNYQV 430
LNPANYTVWQYRR L L DL+ E+ Y+ +I+ SPKNYQV
Sbjct: 72 LNPANYTVWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQV 114
Score = 35.9 bits (79), Expect = 0.039
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 221 VYDYFRAVL-QSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHL-NTDLRTELDYVE 394
V+ Y R L + ++ + D ++ +P NY VW +RR +++ + + + EL +
Sbjct: 79 VWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQVWHHRRFIVETIGESAVNDELHFCS 138
Query: 395 AVIKNSPKNY 424
VI++ KNY
Sbjct: 139 EVIRDENKNY 148
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = +2
Query: 191 VIAHSEKFEDVYDYFRAVLQSNEKS--ERVLHLTKDALELNPANYTVWQYRRDLLKHLNT 364
+I S K V+ + R ++++ +S LH + + NY WQ+R+ +++
Sbjct: 104 IIQESPKNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENKNYHAWQHRQWVVRTFKV 163
Query: 365 DLRTELDYVEAVI-----KNSPKNYQV*LLLILMTSE 460
L EL + ++ NS NY+ L+ + +E
Sbjct: 164 PLEKELTFALHMLLLDNRNNSAYNYRYFLMTLYDKTE 200
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 224 YDYFRAVLQSNEKSERVLHLTKDALEL-NPANYTVWQYRRDLLKHLNTDLRTELDYVEAV 400
Y++F L+S + V K+ + L +P+ Y Y R ++KH T++ + +E
Sbjct: 251 YEHFELCLKSQGYNFSVESTLKETMSLLDPSTYEKHDYMRYMVKHETTNILDDHSAIEDA 310
Query: 401 IKN 409
+KN
Sbjct: 311 LKN 313
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 31.9 bits (69), Expect = 0.64
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 80 ACLIAGTVMFYWIPYK-ERPEWSDVTPV--PEDDGPNPVVVIAH 202
A L+ G+V+ +W+ ++ E+ +W V PV P+ P + ++H
Sbjct: 470 AVLLIGSVILFWLTFQFEKSDWDIVIPVEPPQPPRPEDIAPVSH 513
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 224 YDYFRAVLQSNEKSE-RVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRT 376
+D+ R V + ++SE L + + N +NY+ W YR LK+++ D +T
Sbjct: 162 WDHRRIVARMAKRSEAEELEFSNKLINDNFSNYSAWHYRSIALKNIHRDEKT 213
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 248 QSNEKSERVLHLTKDALELNPANYTVWQYRRDLLKHLNTDLRTELDYVEAVIKNSPKNY 424
QS ++ L L + AL+L+ N+ W +RR + + EL++ +I ++ NY
Sbjct: 136 QSAPDFKKELALCEKALQLDCRNFHCWDHRRIVARMAKRSEAEELEFSNKLINDNFSNY 194
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +2
Query: 152 TPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQ 331
+P+P P ++AH ++ D ++ L +E + L L D P TV
Sbjct: 84 SPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKT 143
Query: 332 YRRDLLKHLNTDLRT 376
LL H + +T
Sbjct: 144 IDNRLLVHAKHEEKT 158
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +2
Query: 152 TPVPEDDGPNPVVVIAHSEKFEDVYDYFRAVLQSNEKSERVLHLTKDALELNPANYTVWQ 331
+P+P P ++AH ++ D ++ L +E + L L D P TV
Sbjct: 98 SPLPPPSFHGPSDLMAHRPTYDPYLDNLKSPLIKDESDGKTLRLRFDVANYKPEEVTVKT 157
Query: 332 YRRDLLKHLNTDLRT 376
LL H + +T
Sbjct: 158 IDNRLLVHAKHEEKT 172
>Z69637-5|CAA93470.2| 315|Caenorhabditis elegans Hypothetical
protein F35G2.5a protein.
Length = 315
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 200 HSEKFEDVYDYFRAVLQSNEKSERVLHLTK-DALELNP-ANYTVWQYRRDLLKHLNTDLR 373
+S +DV+D+F +++N+++E+ + L K L+LN N Y D N+D
Sbjct: 31 YSNPDDDVFDFFPPEVKANQRTEQQIALEKVRQLQLNGFGNVAAETYYDDQPNRHNSDNS 90
Query: 374 TELDYVEAVIKNSPKNYQV 430
++ A I +N +
Sbjct: 91 PNSEFESAKILFQQRNLSI 109
>Z54327-9|CAA91122.2| 839|Caenorhabditis elegans Hypothetical
protein C26D10.4 protein.
Length = 839
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 200 HSEKFEDVYDYFRAVLQSNEKSERVL 277
HS + + D F L SNE SERV+
Sbjct: 315 HSRNYRQLLDIFSGELNSNEDSERVI 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,349,029
Number of Sequences: 27780
Number of extensions: 324860
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -