Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J11
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028195-1|AAH28195.1|  182|Homo sapiens chromosome 12 open read...    31   4.2  
AL953897-6|CAI15881.1|  827|Homo sapiens chromosome 1 open readi...    31   5.6  
AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4) precu...    31   5.6  
AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens ...    31   7.4  
AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activat...    31   7.4  

>BC028195-1|AAH28195.1|  182|Homo sapiens chromosome 12 open reading
           frame 33 protein.
          Length = 182

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = -2

Query: 538 HSAAQRVEVGRVGDGAGRV---------PDRERPWRSGR-GCYCGTS*PCLRRRAAPRSR 389
           HSAA   E G +G G+G V         P R+R    G  GC+ G S    R      S 
Sbjct: 104 HSAAAAGESGDIGPGSGAVEAPGRGARRPTRQREDGGGAVGCF-GVSRHRGREAQMSHSS 162

Query: 388 ECGSRSDSARA 356
            CGSRS SA A
Sbjct: 163 HCGSRSCSAAA 173


>AL953897-6|CAI15881.1|  827|Homo sapiens chromosome 1 open reading
           frame 167 protein.
          Length = 827

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = -2

Query: 415 RRRAAPRSRECGSRSDSARARLRCLERAPAEAALSLWRSLKSADPMALSTFL-SLPV-RG 242
           R  ++P  R C ++S + + RLR LE+       +L  +LK  D +     + + PV RG
Sbjct: 644 RAHSSPEPRACKAQSKAHKRRLRILEKQAQAHGSALLLALKGHDALGHQEEVPAAPVPRG 703

Query: 241 T-FRA----APEVPSEFTVKLPACLRARVGTCLP 155
           T  RA    A +VP      L  C R R     P
Sbjct: 704 TASRAAGFPAGQVPGSGMAALGGCPRGRAAGADP 737


>AB209603-1|BAD92840.1|  337|Homo sapiens amyloid beta (A4)
           precursor protein-binding, family A, member 3 variant
           protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 461 ALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLS---RASPC 327
           +LRS   +W     PA+ SCSP+P  R   R    P   S   R+SPC
Sbjct: 248 SLRSMGRVWWPRHTPASSSCSPRPMARCISRRCQLPHIASLQARSSPC 295


>AK128030-1|BAC87237.1| 2427|Homo sapiens protein ( Homo sapiens cDNA
            FLJ46149 fis, clone TESTI4000621, moderately  similar to
            Homo sapiens Snf2-related CBP activator protein (SRCAP).
            ).
          Length = 2427

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 467  PLALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCP 354
            P  L S L + +  + P TP+ S KP    PVRLSP P
Sbjct: 1083 PQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAP 1120


>AF143946-1|AAD39760.1| 2971|Homo sapiens transcriptional activator
           SRCAP protein.
          Length = 2971

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 467 PLALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCP 354
           P  L S L + +  + P TP+ S KP    PVRLSP P
Sbjct: 886 PQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAP 923


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,031,357
Number of Sequences: 237096
Number of extensions: 1951408
Number of successful extensions: 16311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16308
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)