Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J09
         (926 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.045
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.045
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 369 QGQVXXXQAPQVXPPPPXXRRRXSXGXPRXPXPRXPGPGPPXXPPPXPP 515
           Q Q     AP   P P    +    G P  P    P  GPP  PP   P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = +3

Query: 825 PGP---PXRXPXXPPP-PPPXXXXXPXPPXPPXXP 917
           PGP   P + P  P    PP     P P  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 881 PXPXPPPPPXXAXPP 925
           P P PPPPP  +  P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 907 GGXGGXGXXXXXGGGGGGXXGXRXG 833
           G  GG        GGGGG  G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,804
Number of Sequences: 438
Number of extensions: 5899
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)