Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_J05
(1433 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein. 35 0.63
BC108290-1|AAI08291.1| 316|Homo sapiens LOR protein protein. 34 1.1
BC034690-1|AAH34690.1| 316|Homo sapiens LOR protein protein. 34 1.1
BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein famil... 34 1.1
AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein. 34 1.1
M94077-1|AAA36181.1| 316|Homo sapiens loricrin protein. 34 1.5
M61120-1|AAA36180.1| 316|Homo sapiens loricrin protein. 34 1.5
CR536555-1|CAG38792.1| 316|Homo sapiens LOR protein. 34 1.5
AL161636-5|CAI19560.1| 312|Homo sapiens loricrin protein. 34 1.5
AB013076-1|BAA25794.1| 338|Homo sapiens loricrin protein. 34 1.5
AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA seq... 33 3.4
U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein. 32 5.9
L20433-1|AAA65605.1| 420|Homo sapiens octamer binding transcrip... 32 5.9
>X64624-1|CAA45907.1| 331|Homo sapiens RDC-1 protein.
Length = 331
Score = 35.1 bits (77), Expect = 0.63
Identities = 22/55 (40%), Positives = 23/55 (41%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*G 973
G G+ RG G G G G G RGG GG G G G AG G G G
Sbjct: 45 GAGARRGAGGGGAHDAAGGG-----GPRGGGGGPGGGGPGGGGGGAAGGGGGGPG 94
>BC108290-1|AAI08291.1| 316|Homo sapiens LOR protein protein.
Length = 316
Score = 34.3 bits (75), Expect = 1.1
Identities = 27/99 (27%), Positives = 30/99 (30%)
Frame = -3
Query: 1149 VAAXGCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GV 970
V G G G G G G G G G + GG G + G G G G G
Sbjct: 17 VKTSGGGGGGGGGGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGG 76
Query: 969 AXRVPAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 77 IGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>BC034690-1|AAH34690.1| 316|Homo sapiens LOR protein protein.
Length = 316
Score = 34.3 bits (75), Expect = 1.1
Identities = 27/99 (27%), Positives = 30/99 (30%)
Frame = -3
Query: 1149 VAAXGCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GV 970
V G G G G G G G G G + GG G + G G G G G
Sbjct: 17 VKTSGGGGGGGGGGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGG 76
Query: 969 AXRVPAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 77 IGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>BC003413-1|AAH03413.1| 217|Homo sapiens nucleolar protein family A,
member 1 (H/ACA small nucleolar RNPs) protein.
Length = 217
Score = 34.3 bits (75), Expect = 1.1
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 1086 GAGXGGX*GXRGG*XWXGGXGXA-RXGRGVAGXGXRG 979
G G GG G RGG GG G R GRG G G RG
Sbjct: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG 206
>AJ276003-1|CAB76563.1| 217|Homo sapiens GAR1 protein protein.
Length = 217
Score = 34.3 bits (75), Expect = 1.1
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 1086 GAGXGGX*GXRGG*XWXGGXGXA-RXGRGVAGXGXRG 979
G G GG G RGG GG G R GRG G G RG
Sbjct: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG 206
>M94077-1|AAA36181.1| 316|Homo sapiens loricrin protein.
Length = 316
Score = 33.9 bits (74), Expect = 1.5
Identities = 30/95 (31%), Positives = 33/95 (34%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
GCG G G+G G G G G GG G G + G G G G G G V
Sbjct: 33 GCGFFGGGGSGGGSSGSGCGYSGGGGYSGG----GCGGGSSGGGGGGGIGGCGGGSGGSV 88
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 89 --------KYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>M61120-1|AAA36180.1| 316|Homo sapiens loricrin protein.
Length = 316
Score = 33.9 bits (74), Expect = 1.5
Identities = 30/95 (31%), Positives = 33/95 (34%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
GCG G G+G G G G G GG G G + G G G G G G V
Sbjct: 33 GCGFFGGGGSGGGSSGSGCGYSGGGGYSGG----GCGGGSSGGGGGGGIGGCGGGSGGSV 88
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 89 --------KYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>CR536555-1|CAG38792.1| 316|Homo sapiens LOR protein.
Length = 316
Score = 33.9 bits (74), Expect = 1.5
Identities = 30/95 (31%), Positives = 33/95 (34%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
GCG G G+G G G G G GG G G + G G G G G G V
Sbjct: 33 GCGFFGGGGSGGGSSGSGCGYSGGGGYSGG----GCGGGSSGGGGGGGIGGCGGGSGGSV 88
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 89 --------KYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>AL161636-5|CAI19560.1| 312|Homo sapiens loricrin protein.
Length = 312
Score = 33.9 bits (74), Expect = 1.5
Identities = 30/95 (31%), Positives = 33/95 (34%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
GCG G G+G G G G G GG G G + G G G G G G V
Sbjct: 33 GCGFFGGGGSGGGSSGSGCGYSGGGGYSGG----GCGGGSSGGGGGGGIGGCGGGSGGSV 88
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 89 --------KYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>AB013076-1|BAA25794.1| 338|Homo sapiens loricrin protein.
Length = 338
Score = 33.9 bits (74), Expect = 1.5
Identities = 30/95 (31%), Positives = 33/95 (34%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
GCG G G+G G G G G GG G G + G G G G G G V
Sbjct: 33 GCGFFGGGGSGGGSSGSGCGYSGGGGYSGG----GCGGGSSGGGGGGGIGGCGGGSGGSV 88
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXGXWS 853
GG G G C G G G +S
Sbjct: 89 --------KYSGGGGSSGGGSGCFSSGGGGSGCFS 115
>AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA sequence
from clone RP11-223F20 on chromosome 13 Contains a novel
heterogeneous nuclear ribonucleoprotein family A protein
and).
Length = 276
Score = 32.7 bits (71), Expect = 3.4
Identities = 28/92 (30%), Positives = 31/92 (33%)
Frame = -3
Query: 1137 GCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG*GVAXRV 958
G G+ G G G GG G RGG GG GRG G G
Sbjct: 116 GSGNFMGRGGNFGGAGGNFGLGGNFGGRGGYGGGGGGSRGSYGRGDGGYNRFGRDGGNYG 175
Query: 957 PAWXWXXRAXXGGXGGLXXGXKCXGXLGRGXG 862
+ R GG GG G + G G G G
Sbjct: 176 GGPGYSSRGGYGG-GGTGYGNQGGGYGGGGGG 206
>U10063-1|AAA57161.1| 423|Homo sapiens POU domain factor protein.
Length = 423
Score = 31.9 bits (69), Expect = 5.9
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -3
Query: 1143 AXGCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG 979
A G G+ G G G G GG G GG GG G G G G G G
Sbjct: 134 AGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGGPGGGGGGGPGGGGGGPGGGLLG 188
>L20433-1|AAA65605.1| 420|Homo sapiens octamer binding transcription
factor 1 protein.
Length = 420
Score = 31.9 bits (69), Expect = 5.9
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -3
Query: 1143 AXGCGSXRGXGAGXXLXMCGAGXGGX*GXRGG*XWXGGXGXARXGRGVAGXGXRG 979
A G G+ G G G G GG G GG GG G G G G G G
Sbjct: 131 AGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGGPGGGGGGGPGGGGGGPGGGLLG 185
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,574,152
Number of Sequences: 237096
Number of extensions: 1390841
Number of successful extensions: 6305
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5881
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21046707456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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