Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_J04
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   2.1  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.6  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    27   4.7  
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.3  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   8.3  

>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 270 AALKSSMLSLITNKK---SSCGIYTGIHALFSKGDFRSIEGVPLA 395
           ++L SS  SL+  KK   SS  +    HAL    +F + EGVPLA
Sbjct: 33  SSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEGVPLA 77


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 402 PHDWADYEPDNAGGDQNCILMYPDGNFADVN 494
           PH W DYE ++    QNC L   +   ADV+
Sbjct: 174 PHCWVDYESNDIESVQNCWLGDENLLLADVD 204


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
 Frame = +3

Query: 294 SLITNKKSSCGIYTGIHALFSKGDFRSI---------EGVPL-AKIPHDW-ADYEPDNAG 440
           SL+    +SC I+TG    F +    SI         +  PL  K+P     DY P N  
Sbjct: 11  SLVEETNASCVIHTGDFGFFERSSLPSISERTLRHIVQFSPLIKKLPRSKNFDYYPSNPI 70

Query: 441 GD-QNCILMYPD 473
           GD +N I  +PD
Sbjct: 71  GDLKNSIASHPD 82


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 DYEPDNAGGDQNCILMYPDGNFADVNCTD 503
           +Y PD+     N +L YPDG + + N  D
Sbjct: 247 NYSPDDVAPPPNWVLRYPDG-YTESNMPD 274


>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 213 QEARLRCRLEGSVLASPLDAALKSSMLSLITNKKSSCGIYTGIHALFSKGDFR 371
           +EA    R + SV+ SPL+  LK   L L+ N     G  +G  ++ S  DF+
Sbjct: 80  EEADEAPRTQLSVI-SPLEKKLKRDFLFLLLNSNRQPGKSSGKSSIPSPDDFK 131


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 366 SLLSRITHEYQCRCHTNSSYLLSKTACCF-LKQRPEVKPIQILPNDIL 226
           SLLS  +        T+++  L+K A    +KQRPEV  I I+  ++L
Sbjct: 612 SLLSSSSASIADLSITSATEFLAKVATFLPIKQRPEVSKISIVDENLL 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,203
Number of Sequences: 5004
Number of extensions: 62664
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)